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Genome trees and the tree of life.
Wolf YI, Rogozin IB, Grishin NV, Koonin EV. Wolf YI, et al. Among authors: rogozin ib. Trends Genet. 2002 Sep;18(9):472-9. doi: 10.1016/s0168-9525(02)02744-0. Trends Genet. 2002. PMID: 12175808 Review.
Intron sliding in conserved gene families.
Rogozin IB, Lyons-Weiler J, Koonin EV. Rogozin IB, et al. Trends Genet. 2000 Oct;16(10):430-2. doi: 10.1016/s0168-9525(00)02096-5. Trends Genet. 2000. PMID: 11050324 No abstract available.
Prediction and phylogenetic analysis of mammalian short interspersed elements (SINEs).
Rogozin IB, Mayorov VI, Lavrentieva MV, Milanesi L, Adkison LR. Rogozin IB, et al. Brief Bioinform. 2000 Sep;1(3):260-74. doi: 10.1093/bib/1.3.260. Brief Bioinform. 2000. PMID: 11465037 Review.
Rapid evolution of a cyclin A inhibitor gene, roughex, in Drosophila.
Avedisov SN, Rogozin IB, Koonin EV, Thomas BJ. Avedisov SN, et al. Among authors: rogozin ib. Mol Biol Evol. 2001 Nov;18(11):2110-8. doi: 10.1093/oxfordjournals.molbev.a003752. Mol Biol Evol. 2001. PMID: 11606707
Presence of ATG triplets in 5' untranslated regions of eukaryotic cDNAs correlates with a 'weak' context of the start codon.
Rogozin IB, Kochetov AV, Kondrashov FA, Koonin EV, Milanesi L. Rogozin IB, et al. Bioinformatics. 2001 Oct;17(10):890-900. doi: 10.1093/bioinformatics/17.10.890. Bioinformatics. 2001. PMID: 11673233
CONTACT: rogozin@ncbi.nlm.nih.gov, milanesi@itba.mi.cnr.it....
CONTACT: rogozin@ncbi.nlm.nih.gov, milanesi@itba.mi.cnr.it....
Genome trees constructed using five different approaches suggest new major bacterial clades.
Wolf YI, Rogozin IB, Grishin NV, Tatusov RL, Koonin EV. Wolf YI, et al. Among authors: rogozin ib. BMC Evol Biol. 2001 Oct 20;1:8. doi: 10.1186/1471-2148-1-8. BMC Evol Biol. 2001. PMID: 11734060 Free PMC article.
A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis.
Makarova KS, Aravind L, Grishin NV, Rogozin IB, Koonin EV. Makarova KS, et al. Among authors: rogozin ib. Nucleic Acids Res. 2002 Jan 15;30(2):482-96. doi: 10.1093/nar/30.2.482. Nucleic Acids Res. 2002. PMID: 11788711 Free PMC article.
Constant relative rate of protein evolution and detection of functional diversification among bacterial, archaeal and eukaryotic proteins.
Jordan IK, Kondrashov FA, Rogozin IB, Tatusov RL, Wolf YI, Koonin EV. Jordan IK, et al. Among authors: rogozin ib. Genome Biol. 2001;2(12):RESEARCH0053. doi: 10.1186/gb-2001-2-12-research0053. Epub 2001 Nov 20. Genome Biol. 2001. PMID: 11790256 Free PMC article.
Selection in the evolution of gene duplications.
Kondrashov FA, Rogozin IB, Wolf YI, Koonin EV. Kondrashov FA, et al. Among authors: rogozin ib. Genome Biol. 2002;3(2):RESEARCH0008. doi: 10.1186/gb-2002-3-2-research0008. Epub 2002 Jan 14. Genome Biol. 2002. PMID: 11864370 Free PMC article.
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