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Phylogenomic analysis shows that Bacillus amyloliquefaciens subsp. plantarum is a later heterotypic synonym of Bacillus methylotrophicus.
Dunlap CA, Kim SJ, Kwon SW, Rooney AP. Dunlap CA, et al. Int J Syst Evol Microbiol. 2015 Jul;65(7):2104-2109. doi: 10.1099/ijs.0.000226. Epub 2015 Apr 7. Int J Syst Evol Microbiol. 2015. PMID: 25835027
Ecology of speciation in the genus Bacillus.
Connor N, Sikorski J, Rooney AP, Kopac S, Koeppel AF, Burger A, Cole SG, Perry EB, Krizanc D, Field NC, Slaton M, Cohan FM. Connor N, et al. Appl Environ Microbiol. 2010 Mar;76(5):1349-58. doi: 10.1128/AEM.01988-09. Epub 2010 Jan 4. Appl Environ Microbiol. 2010. PMID: 20048064 Free PMC article.
Phylogenetic analysis of Bacillus subtilis strains applicable to natto (fermented soybean) production.
Kubo Y, Rooney AP, Tsukakoshi Y, Nakagawa R, Hasegawa H, Kimura K. Kubo Y, et al. Appl Environ Microbiol. 2011 Sep;77(18):6463-9. doi: 10.1128/AEM.00448-11. Epub 2011 Jul 15. Appl Environ Microbiol. 2011. PMID: 21764950 Free PMC article.
Phylogeny and molecular taxonomy of the Bacillus subtilis species complex and description of Bacillus subtilis subsp. inaquosorum subsp. nov.
Rooney AP, Price NP, Ehrhardt C, Swezey JL, Bannan JD. Rooney AP, et al. Int J Syst Evol Microbiol. 2009 Oct;59(Pt 10):2429-36. doi: 10.1099/ijs.0.009126-0. Epub 2009 Jul 21. Int J Syst Evol Microbiol. 2009. PMID: 19622642
Analysis of core housekeeping and virulence genes reveals cryptic lineages of Clostridium perfringens that are associated with distinct disease presentations.
Rooney AP, Swezey JL, Friedman R, Hecht DW, Maddox CW. Rooney AP, et al. Genetics. 2006 Apr;172(4):2081-92. doi: 10.1534/genetics.105.054601. Epub 2006 Feb 19. Genetics. 2006. PMID: 16489222 Free PMC article.
Corrigendum: Paraliobacillus sediminis sp. nov., isolated from East China sea sediment.
Cao WR, Guo LY, Du ZJ, Das A, Saren G, Jiang MY, Dunlap CA, Rooney AP, Yu XK, Li TG. Cao WR, et al. Int J Syst Evol Microbiol. 2017 Aug;67(8):3135. doi: 10.1099/ijsem.0.002267. Int J Syst Evol Microbiol. 2017. PMID: 28853691 No abstract available.
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