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VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements.
Toby IT, Levin MK, Salinas EA, Christley S, Bhattacharya S, Breden F, Buntzman A, Corrie B, Fonner J, Gupta NT, Hershberg U, Marthandan N, Rosenfeld A, Rounds W, Rubelt F, Scarborough W, Scott JK, Uduman M, Vander Heiden JA, Scheuermann RH, Monson N, Kleinstein SH, Cowell LG. Toby IT, et al. BMC Bioinformatics. 2016 Oct 6;17(Suppl 13):333. doi: 10.1186/s12859-016-1214-3. BMC Bioinformatics. 2016. PMID: 27766961 Free PMC article.
An atlas of B-cell clonal distribution in the human body.
Meng W, Zhang B, Schwartz GW, Rosenfeld AM, Ren D, Thome JJC, Carpenter DJ, Matsuoka N, Lerner H, Friedman AL, Granot T, Farber DL, Shlomchik MJ, Hershberg U, Luning Prak ET. Meng W, et al. Among authors: rosenfeld am. Nat Biotechnol. 2017 Sep;35(9):879-884. doi: 10.1038/nbt.3942. Epub 2017 Aug 21. Nat Biotechnol. 2017. PMID: 28829438 Free PMC article.
Computational Evaluation of B-Cell Clone Sizes in Bulk Populations.
Rosenfeld AM, Meng W, Chen DY, Zhang B, Granot T, Farber DL, Hershberg U, Luning Prak ET. Rosenfeld AM, et al. Front Immunol. 2018 Jun 29;9:1472. doi: 10.3389/fimmu.2018.01472. eCollection 2018. Front Immunol. 2018. PMID: 30008715 Free PMC article.
Human Lymph Nodes Maintain TCF-1hi Memory T Cells with High Functional Potential and Clonal Diversity throughout Life.
Miron M, Kumar BV, Meng W, Granot T, Carpenter DJ, Senda T, Chen D, Rosenfeld AM, Zhang B, Lerner H, Friedman AL, Hershberg U, Shen Y, Rahman A, Luning Prak ET, Farber DL. Miron M, et al. Among authors: rosenfeld am. J Immunol. 2018 Oct 1;201(7):2132-2140. doi: 10.4049/jimmunol.1800716. Epub 2018 Aug 15. J Immunol. 2018. PMID: 30111633 Free PMC article.
AIRR Community Standardized Representations for Annotated Immune Repertoires.
Vander Heiden JA, Marquez S, Marthandan N, Bukhari SAC, Busse CE, Corrie B, Hershberg U, Kleinstein SH, Matsen Iv FA, Ralph DK, Rosenfeld AM, Schramm CA; AIRR Community; Christley S, Laserson U. Vander Heiden JA, et al. Among authors: rosenfeld am. Front Immunol. 2018 Sep 28;9:2206. doi: 10.3389/fimmu.2018.02206. eCollection 2018. Front Immunol. 2018. PMID: 30323809 Free PMC article.
Liver Is a Generative Site for the B Cell Response to Ehrlichia muris.
Trivedi N, Weisel F, Smita S, Joachim S, Kader M, Radhakrishnan A, Clouser C, Rosenfeld AM, Chikina M, Vigneault F, Hershberg U, Ismail N, Shlomchik MJ. Trivedi N, et al. Among authors: rosenfeld am. Immunity. 2019 Dec 17;51(6):1088-1101.e5. doi: 10.1016/j.immuni.2019.10.004. Epub 2019 Nov 12. Immunity. 2019. PMID: 31732168 Free PMC article.
The Transcription Factor T-bet Resolves Memory B Cell Subsets with Distinct Tissue Distributions and Antibody Specificities in Mice and Humans.
Johnson JL, Rosenthal RL, Knox JJ, Myles A, Naradikian MS, Madej J, Kostiv M, Rosenfeld AM, Meng W, Christensen SR, Hensley SE, Yewdell J, Canaday DH, Zhu J, McDermott AB, Dori Y, Itkin M, Wherry EJ, Pardi N, Weissman D, Naji A, Prak ETL, Betts MR, Cancro MP. Johnson JL, et al. Among authors: rosenfeld am. Immunity. 2020 May 19;52(5):842-855.e6. doi: 10.1016/j.immuni.2020.03.020. Epub 2020 Apr 29. Immunity. 2020. PMID: 32353250 Free PMC article.
37 results