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LocTree2 predicts localization for all domains of life.
Goldberg T, Hamp T, Rost B. Goldberg T, et al. Among authors: rost b. Bioinformatics. 2012 Sep 15;28(18):i458-i465. doi: 10.1093/bioinformatics/bts390. Bioinformatics. 2012. PMID: 22962467 Free PMC article.
MSAViewer: interactive JavaScript visualization of multiple sequence alignments.
Yachdav G, Wilzbach S, Rauscher B, Sheridan R, Sillitoe I, Procter J, Lewis SE, Rost B, Goldberg T. Yachdav G, et al. Among authors: rost b. Bioinformatics. 2016 Nov 15;32(22):3501-3503. doi: 10.1093/bioinformatics/btw474. Epub 2016 Jul 13. Bioinformatics. 2016. PMID: 27412096 Free PMC article.
LocTree3 prediction of localization.
Goldberg T, Hecht M, Hamp T, Karl T, Yachdav G, Ahmed N, Altermann U, Angerer P, Ansorge S, Balasz K, Bernhofer M, Betz A, Cizmadija L, Do KT, Gerke J, Greil R, Joerdens V, Hastreiter M, Hembach K, Herzog M, Kalemanov M, Kluge M, Meier A, Nasir H, Neumaier U, Prade V, Reeb J, Sorokoumov A, Troshani I, Vorberg S, Waldraff S, Zierer J, Nielsen H, Rost B. Goldberg T, et al. Among authors: rost b. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W350-5. doi: 10.1093/nar/gku396. Epub 2014 May 21. Nucleic Acids Res. 2014. PMID: 24848019 Free PMC article.
NLSdb-major update for database of nuclear localization signals and nuclear export signals.
Bernhofer M, Goldberg T, Wolf S, Ahmed M, Zaugg J, Boden M, Rost B. Bernhofer M, et al. Among authors: rost b. Nucleic Acids Res. 2018 Jan 4;46(D1):D503-D508. doi: 10.1093/nar/gkx1021. Nucleic Acids Res. 2018. PMID: 29106588 Free PMC article.
nala: text mining natural language mutation mentions.
Cejuela JM, Bojchevski A, Uhlig C, Bekmukhametov R, Kumar Karn S, Mahmuti S, Baghudana A, Dubey A, Satagopam VP, Rost B. Cejuela JM, et al. Among authors: rost b. Bioinformatics. 2017 Jun 15;33(12):1852-1858. doi: 10.1093/bioinformatics/btx083. Bioinformatics. 2017. PMID: 28200120 Free PMC article.
Accelerating the Original Profile Kernel.
Hamp T, Goldberg T, Rost B. Hamp T, et al. Among authors: rost b. PLoS One. 2013 Jun 18;8(6):e68459. doi: 10.1371/journal.pone.0068459. Print 2013. PLoS One. 2013. PMID: 23825697 Free PMC article.
FunFam protein families improve residue level molecular function prediction.
Scheibenreif L, Littmann M, Orengo C, Rost B. Scheibenreif L, et al. Among authors: rost b. BMC Bioinformatics. 2019 Jul 18;20(1):400. doi: 10.1186/s12859-019-2988-x. BMC Bioinformatics. 2019. PMID: 31319797 Free PMC article.
LocText: relation extraction of protein localizations to assist database curation.
Cejuela JM, Vinchurkar S, Goldberg T, Prabhu Shankar MS, Baghudana A, Bojchevski A, Uhlig C, Ofner A, Raharja-Liu P, Jensen LJ, Rost B. Cejuela JM, et al. Among authors: rost b. BMC Bioinformatics. 2018 Jan 17;19(1):15. doi: 10.1186/s12859-018-2021-9. BMC Bioinformatics. 2018. PMID: 29343218 Free PMC article.
Computational prediction shines light on type III secretion origins.
Goldberg T, Rost B, Bromberg Y. Goldberg T, et al. Among authors: rost b. Sci Rep. 2016 Oct 7;6:34516. doi: 10.1038/srep34516. Sci Rep. 2016. PMID: 27713481 Free PMC article.
TMSEG: Novel prediction of transmembrane helices.
Bernhofer M, Kloppmann E, Reeb J, Rost B. Bernhofer M, et al. Among authors: rost b. Proteins. 2016 Nov;84(11):1706-1716. doi: 10.1002/prot.25155. Epub 2016 Sep 16. Proteins. 2016. PMID: 27566436 Free PMC article.
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