Rougemont J - Search Results

1

PyroTRF-ID: a novel bioinformatics methodology for the affiliation of terminal-restriction fragments using 16S rRNA gene pyrosequencing data.

Weissbrodt DG, Shani N, Sinclair L, Lefebvre G, Rossi P, Maillard J, Rougemont J, Holliger C. Weissbrodt DG, et al. Among authors: rougemont j. BMC Microbiol. 2012 Dec 27;12:306. doi: 10.1186/1471-2180-12-306. BMC Microbiol. 2012. PMID: 23270314 Free PMC article.

2

Processing and analyzing ChIP-seq data: from short reads to regulatory interactions.

Leleu M, Lefebvre G, Rougemont J. Leleu M, et al. Among authors: rougemont j. Brief Funct Genomics. 2010 Dec;9(5-6):466-76. doi: 10.1093/bfgp/elq022. Epub 2010 Sep 22. Brief Funct Genomics. 2010. PMID: 20861161 Free PMC article.

3

HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis.

David FP, Delafontaine J, Carat S, Ross FJ, Lefebvre G, Jarosz Y, Sinclair L, Noordermeer D, Rougemont J, Leleu M. David FP, et al. Among authors: rougemont j. PLoS One. 2014 Jan 27;9(1):e85879. doi: 10.1371/journal.pone.0085879. eCollection 2014. PLoS One. 2014. PMID: 24475057 Free PMC article.

4

Analysis of HIV-1 expression level and sense of transcription by high-throughput sequencing of the infected cell.

Lefebvre G, Desfarges S, Uyttebroeck F, Muñoz M, Beerenwinkel N, Rougemont J, Telenti A, Ciuffi A. Lefebvre G, et al. Among authors: rougemont j. J Virol. 2011 Jul;85(13):6205-11. doi: 10.1128/JVI.00252-11. Epub 2011 Apr 20. J Virol. 2011. PMID: 21507965 Free PMC article.

5

A multiplicity of factors contributes to selective RNA polymerase III occupancy of a subset of RNA polymerase III genes in mouse liver.

Canella D, Bernasconi D, Gilardi F, LeMartelot G, Migliavacca E, Praz V, Cousin P, Delorenzi M, Hernandez N; CycliX Consortium. Canella D, et al. Genome Res. 2012 Apr;22(4):666-80. doi: 10.1101/gr.130286.111. Epub 2012 Jan 27. Genome Res. 2012. PMID: 22287103 Free PMC article.

6

Perinatal exposure to bisphenol a increases adult mammary gland progesterone response and cell number.

Ayyanan A, Laribi O, Schuepbach-Mallepell S, Schrick C, Gutierrez M, Tanos T, Lefebvre G, Rougemont J, Yalcin-Ozuysal O, Brisken C. Ayyanan A, et al. Among authors: rougemont j. Mol Endocrinol. 2011 Nov;25(11):1915-23. doi: 10.1210/me.2011-1129. Epub 2011 Sep 8. Mol Endocrinol. 2011. PMID: 21903720 Free PMC article.

7

Computational analysis of protein-DNA interactions from ChIP-seq data.

Rougemont J, Naef F. Rougemont J, et al. Methods Mol Biol. 2012;786:263-73. doi: 10.1007/978-1-61779-292-2_16. Methods Mol Biol. 2012. PMID: 21938632

8

Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles.

Le Martelot G, Canella D, Symul L, Migliavacca E, Gilardi F, Liechti R, Martin O, Harshman K, Delorenzi M, Desvergne B, Herr W, Deplancke B, Schibler U, Rougemont J, Guex N, Hernandez N, Naef F; CycliX Consortium. Le Martelot G, et al. Among authors: rougemont j. PLoS Biol. 2012;10(11):e1001442. doi: 10.1371/journal.pbio.1001442. Epub 2012 Nov 27. PLoS Biol. 2012. PMID: 23209382 Free PMC article.

9

Probabilistic base calling of Solexa sequencing data.

Rougemont J, Amzallag A, Iseli C, Farinelli L, Xenarios I, Naef F. Rougemont J, et al. BMC Bioinformatics. 2008 Oct 13;9:431. doi: 10.1186/1471-2105-9-431. BMC Bioinformatics. 2008. PMID: 18851737 Free PMC article.

10

Genome-wide analysis of SREBP1 activity around the clock reveals its combined dependency on nutrient and circadian signals.

Gilardi F, Migliavacca E, Naldi A, Baruchet M, Canella D, Le Martelot G, Guex N, Desvergne B; CycliX Consortium. Gilardi F, et al. PLoS Genet. 2014 Mar 6;10(3):e1004155. doi: 10.1371/journal.pgen.1004155. eCollection 2014 Mar. PLoS Genet. 2014. PMID: 24603613 Free PMC article.

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