Ruan X - Search Results

1

Genome-wide analysis reveals methyl-CpG-binding protein 2-dependent regulation of microRNAs in a mouse model of Rett syndrome.

Wu H, Tao J, Chen PJ, Shahab A, Ge W, Hart RP, Ruan X, Ruan Y, Sun YE. Wu H, et al. Among authors: ruan x, ruan y. Proc Natl Acad Sci U S A. 2010 Oct 19;107(42):18161-6. doi: 10.1073/pnas.1005595107. Epub 2010 Oct 4. Proc Natl Acad Sci U S A. 2010. PMID: 20921386 Free PMC article.

2

Genome wide full-length transcript analysis using 5' and 3' paired-end-tag next generation sequencing (RNA-PET).

Ruan X, Ruan Y. Ruan X, et al. Among authors: ruan y. Methods Mol Biol. 2012;809:535-62. doi: 10.1007/978-1-61779-376-9_35. Methods Mol Biol. 2012. PMID: 22113299

3

Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation.

Li G, Ruan X, Auerbach RK, Sandhu KS, Zheng M, Wang P, Poh HM, Goh Y, Lim J, Zhang J, Sim HS, Peh SQ, Mulawadi FH, Ong CT, Orlov YL, Hong S, Zhang Z, Landt S, Raha D, Euskirchen G, Wei CL, Ge W, Wang H, Davis C, Fisher-Aylor KI, Mortazavi A, Gerstein M, Gingeras T, Wold B, Sun Y, Fullwood MJ, Cheung E, Liu E, Sung WK, Snyder M, Ruan Y. Li G, et al. Among authors: ruan x, ruan y. Cell. 2012 Jan 20;148(1-2):84-98. doi: 10.1016/j.cell.2011.12.014. Cell. 2012. PMID: 22265404 Free PMC article.

4

Chromatin interaction analysis using paired-end tag sequencing.

Fullwood MJ, Han Y, Wei CL, Ruan X, Ruan Y. Fullwood MJ, et al. Among authors: ruan x, ruan y. Curr Protoc Mol Biol. 2010 Jan;Chapter 21:Unit 21.15.1-25. doi: 10.1002/0471142727.mb2115s89. Curr Protoc Mol Biol. 2010. PMID: 20069536 Free PMC article.

5

Chromatin Immunoprecipitation for Chromatin Interaction Analysis Using Paired-End-Tag (ChIA-PET) Sequencing in Tadpole Tissues.

Buisine N, Ruan X, Ruan Y, Sachs LM. Buisine N, et al. Among authors: ruan x, ruan y. Cold Spring Harb Protoc. 2018 Aug 1;2018(8). doi: 10.1101/pdb.prot097725. Cold Spring Harb Protoc. 2018. PMID: 29895563

6

An integrated encyclopedia of DNA elements in the human genome.

ENCODE Project Consortium. ENCODE Project Consortium. Nature. 2012 Sep 6;489(7414):57-74. doi: 10.1038/nature11247. Nature. 2012. PMID: 22955616 Free PMC article.

7

Chromatin Interaction Analysis Using Paired-End-Tag (ChIA-PET) Sequencing in Tadpole Tissues.

Buisine N, Ruan X, Ruan Y, Sachs LM. Buisine N, et al. Among authors: ruan x, ruan y. Cold Spring Harb Protoc. 2018 Aug 1;2018(8). doi: 10.1101/pdb.prot104620. Cold Spring Harb Protoc. 2018. PMID: 29895565

8

Transcriptional consequences of genomic structural aberrations in breast cancer.

Inaki K, Hillmer AM, Ukil L, Yao F, Woo XY, Vardy LA, Zawack KF, Lee CW, Ariyaratne PN, Chan YS, Desai KV, Bergh J, Hall P, Putti TC, Ong WL, Shahab A, Cacheux-Rataboul V, Karuturi RK, Sung WK, Ruan X, Bourque G, Ruan Y, Liu ET. Inaki K, et al. Among authors: ruan x, ruan y. Genome Res. 2011 May;21(5):676-87. doi: 10.1101/gr.113225.110. Epub 2011 Apr 5. Genome Res. 2011. PMID: 21467264 Free PMC article.

9

A user's guide to the encyclopedia of DNA elements (ENCODE).

ENCODE Project Consortium. ENCODE Project Consortium. PLoS Biol. 2011 Apr;9(4):e1001046. doi: 10.1371/journal.pbio.1001046. Epub 2011 Apr 19. PLoS Biol. 2011. PMID: 21526222 Free PMC article.

10

Chromatin Interaction Analysis with Paired-End Tag Sequencing (ChIA-PET) for mapping chromatin interactions and understanding transcription regulation.

Goh Y, Fullwood MJ, Poh HM, Peh SQ, Ong CT, Zhang J, Ruan X, Ruan Y. Goh Y, et al. Among authors: ruan x, ruan y. J Vis Exp. 2012 Apr 30;(62):3770. doi: 10.3791/3770. J Vis Exp. 2012. PMID: 22564980 Free PMC article.

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