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MitoBamAnnotator: A web-based tool for detecting and annotating heteroplasmy in human mitochondrial DNA sequences.
Zhidkov I, Nagar T, Mishmar D, Rubin E. Zhidkov I, et al. Among authors: rubin e. Mitochondrion. 2011 Nov;11(6):924-8. doi: 10.1016/j.mito.2011.08.005. Epub 2011 Aug 22. Mitochondrion. 2011. PMID: 21875693
MtDNA mutation pattern in tumors and human evolution are shaped by similar selective constraints.
Zhidkov I, Livneh EA, Rubin E, Mishmar D. Zhidkov I, et al. Among authors: rubin e. Genome Res. 2009 Apr;19(4):576-80. doi: 10.1101/gr.086462.108. Epub 2009 Feb 10. Genome Res. 2009. PMID: 19211544 Free PMC article.
The Neural/Immune Gene Ontology: clipping the Gene Ontology for neurological and immunological systems.
Geifman N, Monsonego A, Rubin E. Geifman N, et al. Among authors: rubin e. BMC Bioinformatics. 2010 Sep 12;11:458. doi: 10.1186/1471-2105-11-458. BMC Bioinformatics. 2010. PMID: 20831831 Free PMC article.
Serum apolipoproteins C-I and C-III are reduced in stomach cancer patients: results from MALDI-based peptidome and immuno-based clinical assays.
Cohen M, Yossef R, Erez T, Kugel A, Welt M, Karpasas MM, Bones J, Rudd PM, Taieb J, Boissin H, Harats D, Noy K, Tekoah Y, Lichtenstein RG, Rubin E, Porgador A. Cohen M, et al. Among authors: rubin e. PLoS One. 2011 Jan 18;6(1):e14540. doi: 10.1371/journal.pone.0014540. PLoS One. 2011. PMID: 21267442 Free PMC article.
CHILD: a new tool for detecting low-abundance insertions and deletions in standard sequence traces.
Zhidkov I, Cohen R, Geifman N, Mishmar D, Rubin E. Zhidkov I, et al. Among authors: rubin e. Nucleic Acids Res. 2011 Apr;39(7):e47. doi: 10.1093/nar/gkq1354. Epub 2011 Jan 28. Nucleic Acids Res. 2011. PMID: 21278161 Free PMC article.
Mitochondrial DNA heteroplasmy in diabetes and normal adults: role of acquired and inherited mutational patterns in twins.
Avital G, Buchshtav M, Zhidkov I, Tuval Feder J, Dadon S, Rubin E, Glass D, Spector TD, Mishmar D. Avital G, et al. Among authors: rubin e. Hum Mol Genet. 2012 Oct 1;21(19):4214-24. doi: 10.1093/hmg/dds245. Epub 2012 Jun 26. Hum Mol Genet. 2012. PMID: 22736028 Free PMC article.
To test this, we used next-generation sequencing, i.e. massive parallel sequencing (MPS), along with PCR-cloning-Sanger sequencing to analyze HM in blood and skeletal muscle DNA samples from monozygotic (MZ) twins either concordant or discordant for T2DM. ...
To test this, we used next-generation sequencing, i.e. massive parallel sequencing (MPS), along with PCR-cloning-Sanger sequencing to …
The mouse age phenome knowledgebase and disease-specific inter-species age mapping.
Geifman N, Rubin E. Geifman N, et al. Among authors: rubin e. PLoS One. 2013 Dec 3;8(12):e81114. doi: 10.1371/journal.pone.0081114. eCollection 2013. PLoS One. 2013. PMID: 24312529 Free PMC article.
Towards an Age-Phenome Knowledge-base.
Geifman N, Rubin E. Geifman N, et al. Among authors: rubin e. BMC Bioinformatics. 2011 Jun 8;12:229. doi: 10.1186/1471-2105-12-229. BMC Bioinformatics. 2011. PMID: 21651792 Free PMC article.
Extracting tumor tissue immune status from expression profiles: correlating renal cancer prognosis with tumor-associated immunome.
Teltsh O, Porgador A, Rubin E. Teltsh O, et al. Among authors: rubin e. Oncotarget. 2015 Oct 20;6(32):33191-205. doi: 10.18632/oncotarget.5052. Oncotarget. 2015. PMID: 26384298 Free PMC article.
Reverse translational bioinformatics: a bioinformatics assay of age, gender and clinical biomarkers.
Fliss A, Ragolsky M, Rubin E. Fliss A, et al. Among authors: rubin e. Summit Transl Bioinform. 2008 Mar 1;2008:11-5. Summit Transl Bioinform. 2008. PMID: 21347121 Free PMC article.
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