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Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill.
Mason OU, Hazen TC, Borglin S, Chain PS, Dubinsky EA, Fortney JL, Han J, Holman HY, Hultman J, Lamendella R, Mackelprang R, Malfatti S, Tom LM, Tringe SG, Woyke T, Zhou J, Rubin EM, Jansson JK. Mason OU, et al. Among authors: rubin em. ISME J. 2012 Sep;6(9):1715-27. doi: 10.1038/ismej.2012.59. Epub 2012 Jun 21. ISME J. 2012. PMID: 22717885 Free PMC article.
Comparative metagenomics reveals impact of contaminants on groundwater microbiomes.
Hemme CL, Tu Q, Shi Z, Qin Y, Gao W, Deng Y, Nostrand JD, Wu L, He Z, Chain PS, Tringe SG, Fields MW, Rubin EM, Tiedje JM, Hazen TC, Arkin AP, Zhou J. Hemme CL, et al. Among authors: rubin em. Front Microbiol. 2015 Oct 31;6:1205. doi: 10.3389/fmicb.2015.01205. eCollection 2015. Front Microbiol. 2015. PMID: 26583008 Free PMC article.
Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production.
Hemme CL, Mouttaki H, Lee YJ, Zhang G, Goodwin L, Lucas S, Copeland A, Lapidus A, Glavina del Rio T, Tice H, Saunders E, Brettin T, Detter JC, Han CS, Pitluck S, Land ML, Hauser LJ, Kyrpides N, Mikhailova N, He Z, Wu L, Van Nostrand JD, Henrissat B, He Q, Lawson PA, Tanner RS, Lynd LR, Wiegel J, Fields MW, Arkin AP, Schadt CW, Stevenson BS, McInerney MJ, Yang Y, Dong H, Xing D, Ren N, Wang A, Huhnke RL, Mielenz JR, Ding SY, Himmel ME, Taghavi S, van der Lelie D, Rubin EM, Zhou J. Hemme CL, et al. Among authors: rubin em. J Bacteriol. 2010 Dec;192(24):6494-6. doi: 10.1128/JB.01064-10. Epub 2010 Oct 1. J Bacteriol. 2010. PMID: 20889752 Free PMC article.
Metagenomics: DNA sequencing of environmental samples.
Tringe SG, Rubin EM. Tringe SG, et al. Among authors: rubin em. Nat Rev Genet. 2005 Nov;6(11):805-14. doi: 10.1038/nrg1709. Nat Rev Genet. 2005. PMID: 16304596 Free article. Review.
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite.
Warnecke F, Luginbühl P, Ivanova N, Ghassemian M, Richardson TH, Stege JT, Cayouette M, McHardy AC, Djordjevic G, Aboushadi N, Sorek R, Tringe SG, Podar M, Martin HG, Kunin V, Dalevi D, Madejska J, Kirton E, Platt D, Szeto E, Salamov A, Barry K, Mikhailova N, Kyrpides NC, Matson EG, Ottesen EA, Zhang X, Hernández M, Murillo C, Acosta LG, Rigoutsos I, Tamayo G, Green BD, Chang C, Rubin EM, Mathur EJ, Robertson DE, Hugenholtz P, Leadbetter JR. Warnecke F, et al. Among authors: rubin em. Nature. 2007 Nov 22;450(7169):560-5. doi: 10.1038/nature06269. Nature. 2007. PMID: 18033299 Free article.
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen.
Hess M, Sczyrba A, Egan R, Kim TW, Chokhawala H, Schroth G, Luo S, Clark DS, Chen F, Zhang T, Mackie RI, Pennacchio LA, Tringe SG, Visel A, Woyke T, Wang Z, Rubin EM. Hess M, et al. Among authors: rubin em. Science. 2011 Jan 28;331(6016):463-7. doi: 10.1126/science.1200387. Science. 2011. PMID: 21273488
Comparative metagenomics of microbial communities.
Tringe SG, von Mering C, Kobayashi A, Salamov AA, Chen K, Chang HW, Podar M, Short JM, Mathur EJ, Detter JC, Bork P, Hugenholtz P, Rubin EM. Tringe SG, et al. Among authors: rubin em. Science. 2005 Apr 22;308(5721):554-7. doi: 10.1126/science.1107851. Science. 2005. PMID: 15845853
Symbiosis insights through metagenomic analysis of a microbial consortium.
Woyke T, Teeling H, Ivanova NN, Huntemann M, Richter M, Gloeckner FO, Boffelli D, Anderson IJ, Barry KW, Shapiro HJ, Szeto E, Kyrpides NC, Mussmann M, Amann R, Bergin C, Ruehland C, Rubin EM, Dubilier N. Woyke T, et al. Among authors: rubin em. Nature. 2006 Oct 26;443(7114):950-5. doi: 10.1038/nature05192. Epub 2006 Sep 17. Nature. 2006. PMID: 16980956
The airborne metagenome in an indoor urban environment.
Tringe SG, Zhang T, Liu X, Yu Y, Lee WH, Yap J, Yao F, Suan ST, Ing SK, Haynes M, Rohwer F, Wei CL, Tan P, Bristow J, Rubin EM, Ruan Y. Tringe SG, et al. Among authors: rubin em. PLoS One. 2008 Apr 2;3(4):e1862. doi: 10.1371/journal.pone.0001862. PLoS One. 2008. PMID: 18382653 Free PMC article.
257 results