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Page 1
Nomenclature for Tracking of Genetic Variation of Seasonal Influenza Viruses.
Neher RA, Huddleston J, Bedford T, Lewis NS, Harvey R, Galiano M, Byrne AMP, James S, Smith D, Łuksza M, Ruchnewitz D, Laessig M, Fujisaki S, Watanabe S, Hasegawa H, Hassell N, Wentworth DE, Kondor R, Deng YM, Dapat C, Subbarao K, Barr I. Neher RA, et al. Among authors: ruchnewitz d. Influenza Other Respir Viruses. 2026 Feb;20(2):e70230. doi: 10.1111/irv.70230. Influenza Other Respir Viruses. 2026. PMID: 41688063 Free PMC article.
Pre-existing neutralizing antibodies against cattle-transmitted influenza A virus H5N1 are detectable in unexposed individuals.
Daniel K, Ullrich L, Ruchnewitz D, Meijers M, Halwe NJ, Wild U, Eberhardt J, Schön J, Stumpf R, Schlotz M, Wunsch M, Girao Lessa L, Abdelwhab EM, Kuryshko M, Dietrich C, Pinger A, Schumacher AL, Germer M, Rohde M, Kukat C, Gieselmann L, Gruell H, Hoffmann D, Beer M, Erren T, Lässig M, Kreer C, Klein F. Daniel K, et al. Among authors: ruchnewitz d. Immunity. 2026 Feb 10;59(2):494-508.e8. doi: 10.1016/j.immuni.2025.12.013. Epub 2026 Jan 30. Immunity. 2026. PMID: 41619731 Free article.
T cell epitope mapping reveals immunodominance of evolutionarily conserved regions within SARS-CoV-2 proteome.
Cimen Bozkus C, Brown M, Velazquez L, Thomas M, Wilson EA, O'Donnell T, Kaminska A, Ruchnewitz D, Geertz D, Bykov Y, Kodysh J, Oguntuyo KY, Roudko V, Hoyos D, Srivastava KD, Kleiner G, Alshammary H, Karekar N, McClain C, Gopal R, Nie K, Del Valle D, Delbeau-Zagelbaum D, Rodriguez D, Setal J; Mount Sinai COVID-19 Biobank Team; Carroll E, Wiesendanger M, Gulko PS, Charney A, Merad M, Kim-Schulze S, Lee B, Wajnberg A, Simon V, Greenbaum BD, Chowell D, Vabret N, Luksza M, Bhardwaj N. Cimen Bozkus C, et al. Among authors: ruchnewitz d. iScience. 2025 Jul 2;28(8):113044. doi: 10.1016/j.isci.2025.113044. eCollection 2025 Aug 15. iScience. 2025. PMID: 40746995 Free PMC article.
Concepts and Methods for Predicting Viral Evolution.
Meijers M, Ruchnewitz D, Eberhardt J, Karmakar M, Łuksza M, Lässig M. Meijers M, et al. Among authors: ruchnewitz d. Methods Mol Biol. 2025;2890:253-290. doi: 10.1007/978-1-0716-4326-6_14. Methods Mol Biol. 2025. PMID: 39890732
T cell epitope mapping reveals immunodominance of evolutionarily conserved regions within SARS-CoV-2 proteome.
Bozkus CC, Brown M, Velazquez L, Thomas M, Wilson EA, O'Donnell T, Ruchnewitz D, Geertz D, Bykov Y, Kodysh J, Oguntuyo KY, Roudko V, Hoyos D, Srivastava KD, Kleiner G, Alshammary H, Karekar N, McClain C, Gopal R, Nie K, Del Valle D, Delbeau-Zagelbaum D, Rodriguez D, Setal J; Mount Sinai COVID-19 Biobank Team; Carroll E, Wiesendanger M, Gulko PS, Charney A, Merad M, Kim-Schulze S, Lee B, Wajnberg A, Simon V, Greenbaum BD, Chowell D, Vabret N, Luksza M, Bhardwaj N. Bozkus CC, et al. Among authors: ruchnewitz d. bioRxiv [Preprint]. 2025 Apr 9:2024.10.23.619918. doi: 10.1101/2024.10.23.619918. bioRxiv. 2025. Update in: iScience. 2025 Jul 02;28(8):113044. doi: 10.1016/j.isci.2025.113044. PMID: 39484455 Free PMC article. Updated. Preprint.
Optimized quantification of intra-host viral diversity in SARS-CoV-2 and influenza virus sequence data.
Roder AE, Johnson KEE, Knoll M, Khalfan M, Wang B, Schultz-Cherry S, Banakis S, Kreitman A, Mederos C, Youn JH, Mercado R, Wang W, Chung M, Ruchnewitz D, Samanovic MI, Mulligan MJ, Lässig M, Luksza M, Das S, Gresham D, Ghedin E. Roder AE, et al. Among authors: ruchnewitz d. mBio. 2023 Aug 31;14(4):e0104623. doi: 10.1128/mbio.01046-23. Epub 2023 Jun 30. mBio. 2023. PMID: 37389439 Free PMC article.
Optimized Quantification of Intrahost Viral Diversity in SARS-CoV-2 and Influenza Virus Sequence Data.
Roder AE, Johnson K, Knoll M, Khalfan M, Wang B, Schultz-Cherry S, Banakis S, Kreitman A, Mederos C, Youn JH, Mercado R, Wang W, Ruchnewitz D, Samanovic MI, Mulligan MJ, Lassig M, Åuksza M, Das S, Gresham D, Ghedin E. Roder AE, et al. Among authors: ruchnewitz d. bioRxiv [Preprint]. 2022 Aug 16:2021.05.05.442873. doi: 10.1101/2021.05.05.442873. bioRxiv. 2022. Update in: mBio. 2023 Aug 31;14(4):e0104623. doi: 10.1128/mbio.01046-23. PMID: 36656775 Free PMC article. Updated. Preprint.
12 results