Ruijter JM - Search Results

1

Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data.

Ruijter JM, Ramakers C, Hoogaars WM, Karlen Y, Bakker O, van den Hoff MJ, Moorman AF. Ruijter JM, et al. Nucleic Acids Res. 2009 Apr;37(6):e45. doi: 10.1093/nar/gkp045. Epub 2009 Feb 22. Nucleic Acids Res. 2009. PMID: 19237396 Free PMC article.

2

Three-dimensional measurement and visualization of morphogenesis applied to cardiac embryology.

Soufan AT, van den Berg G, Moerland PD, Massink MM, van den Hoff MJ, Moorman AF, Ruijter JM. Soufan AT, et al. Among authors: ruijter jm. J Microsc. 2007 Mar;225(Pt 3):269-74. doi: 10.1111/j.1365-2818.2007.01742.x. J Microsc. 2007. PMID: 17371450

3

Glutamine synthetase expression in perinatal spiny mouse liver.

Lamers WH, Boon L, Van Hemert FJ, Labruyère WT, De Jong P, Ruijter JM, Moorman AF. Lamers WH, et al. Among authors: ruijter jm. Eur J Biochem. 1999 Jun;262(3):803-9. doi: 10.1046/j.1432-1327.1999.00436.x. Eur J Biochem. 1999. PMID: 10411642

4

Fluorescent-increase kinetics of different fluorescent reporters used for qPCR depend on monitoring chemistry, targeted sequence, type of DNA input and PCR efficiency.

Ruijter JM, Lorenz P, Tuomi JM, Hecker M, van den Hoff MJ. Ruijter JM, et al. Mikrochim Acta. 2014;181(13-14):1689-1696. doi: 10.1007/s00604-013-1155-8. Epub 2014 Jan 14. Mikrochim Acta. 2014. PMID: 25253910 Free PMC article.

5

Bias in the Cq value observed with hydrolysis probe based quantitative PCR can be corrected with the estimated PCR efficiency value.

Tuomi JM, Voorbraak F, Jones DL, Ruijter JM. Tuomi JM, et al. Among authors: ruijter jm. Methods. 2010 Apr;50(4):313-22. doi: 10.1016/j.ymeth.2010.02.003. Epub 2010 Feb 6. Methods. 2010. PMID: 20138998

6

Evaluation of qPCR curve analysis methods for reliable biomarker discovery: bias, resolution, precision, and implications.

Ruijter JM, Pfaffl MW, Zhao S, Spiess AN, Boggy G, Blom J, Rutledge RG, Sisti D, Lievens A, De Preter K, Derveaux S, Hellemans J, Vandesompele J. Ruijter JM, et al. Methods. 2013 Jan;59(1):32-46. doi: 10.1016/j.ymeth.2012.08.011. Epub 2012 Sep 3. Methods. 2013. PMID: 22975077

7

Practical data handling pipeline improves performance of qPCR-based circulating miRNA measurements.

de Ronde MWJ, Ruijter JM, Lanfear D, Bayes-Genis A, Kok MGM, Creemers EE, Pinto YM, Pinto-Sietsma SJ. de Ronde MWJ, et al. Among authors: ruijter jm. RNA. 2017 May;23(5):811-821. doi: 10.1261/rna.059063.116. Epub 2017 Feb 15. RNA. 2017. PMID: 28202710 Free PMC article.

8

RDML-Ninja and RDMLdb for standardized exchange of qPCR data.

Ruijter JM, Lefever S, Anckaert J, Hellemans J, Pfaffl MW, Benes V, Bustin SA, Vandesompele J, Untergasser A; RDML consortium. Ruijter JM, et al. BMC Bioinformatics. 2015 Jun 20;16(1):197. doi: 10.1186/s12859-015-0637-6. BMC Bioinformatics. 2015. PMID: 26087842 Free PMC article.

9

Amplification of nonspecific products in quantitative polymerase chain reactions (qPCR).

Ruiz-Villalba A, van Pelt-Verkuil E, Gunst QD, Ruijter JM, van den Hoff MJ. Ruiz-Villalba A, et al. Among authors: ruijter jm. Biomol Detect Quantif. 2017 Nov 1;14:7-18. doi: 10.1016/j.bdq.2017.10.001. eCollection 2017 Dec. Biomol Detect Quantif. 2017. PMID: 29255685 Free PMC article.

10

EMERGE: a flexible modelling framework to predict genomic regulatory elements from genomic signatures.

van Duijvenboden K, de Boer BA, Capon N, Ruijter JM, Christoffels VM. van Duijvenboden K, et al. Among authors: ruijter jm. Nucleic Acids Res. 2016 Mar 18;44(5):e42. doi: 10.1093/nar/gkv1144. Epub 2015 Nov 3. Nucleic Acids Res. 2016. PMID: 26531828 Free PMC article.

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