Ruzzo WL - Search Results

1

Sequence-based heuristics for faster annotation of non-coding RNA families.

Weinberg Z, Ruzzo WL. Weinberg Z, et al. Among authors: ruzzo wl. Bioinformatics. 2006 Jan 1;22(1):35-9. doi: 10.1093/bioinformatics/bti743. Epub 2005 Nov 2. Bioinformatics. 2006. PMID: 16267089

2

A linear time algorithm for finding all maximal scoring subsequences.

Ruzzo WL, Tompa M. Ruzzo WL, et al. Proc Int Conf Intell Syst Mol Biol. 1999:234-41. Proc Int Conf Intell Syst Mol Biol. 1999. PMID: 10786306

3

Validating clustering for gene expression data.

Yeung KY, Haynor DR, Ruzzo WL. Yeung KY, et al. Among authors: ruzzo wl. Bioinformatics. 2001 Apr;17(4):309-18. doi: 10.1093/bioinformatics/17.4.309. Bioinformatics. 2001. PMID: 11301299

4

Principal component analysis for clustering gene expression data.

Yeung KY, Ruzzo WL. Yeung KY, et al. Among authors: ruzzo wl. Bioinformatics. 2001 Sep;17(9):763-74. doi: 10.1093/bioinformatics/17.9.763. Bioinformatics. 2001. PMID: 11590094

5

Model-based clustering and data transformations for gene expression data.

Yeung KY, Fraley C, Murua A, Raftery AE, Ruzzo WL. Yeung KY, et al. Among authors: ruzzo wl. Bioinformatics. 2001 Oct;17(10):977-87. doi: 10.1093/bioinformatics/17.10.977. Bioinformatics. 2001. PMID: 11673243

6

Pre-mRNA secondary structure prediction aids splice site prediction.

Patterson DJ, Yasuhara K, Ruzzo WL. Patterson DJ, et al. Among authors: ruzzo wl. Pac Symp Biocomput. 2002:223-34. Pac Symp Biocomput. 2002. PMID: 11928478 Free article.

7

Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy.

Weinberg Z, Ruzzo WL. Weinberg Z, et al. Among authors: ruzzo wl. Bioinformatics. 2004 Aug 4;20 Suppl 1:i334-41. doi: 10.1093/bioinformatics/bth925. Bioinformatics. 2004. PMID: 15262817

8

CMfinder--a covariance model based RNA motif finding algorithm.

Yao Z, Weinberg Z, Ruzzo WL. Yao Z, et al. Among authors: ruzzo wl. Bioinformatics. 2006 Feb 15;22(4):445-52. doi: 10.1093/bioinformatics/btk008. Epub 2005 Dec 15. Bioinformatics. 2006. PMID: 16357030

9

A regression-based K nearest neighbor algorithm for gene function prediction from heterogeneous data.

Yao Z, Ruzzo WL. Yao Z, et al. Among authors: ruzzo wl. BMC Bioinformatics. 2006 Mar 20;7 Suppl 1(Suppl 1):S11. doi: 10.1186/1471-2105-7-S1-S11. BMC Bioinformatics. 2006. PMID: 16723004 Free PMC article.

10

A computational pipeline for high- throughput discovery of cis-regulatory noncoding RNA in prokaryotes.

Yao Z, Barrick J, Weinberg Z, Neph S, Breaker R, Tompa M, Ruzzo WL. Yao Z, et al. Among authors: ruzzo wl. PLoS Comput Biol. 2007 Jul;3(7):e126. doi: 10.1371/journal.pcbi.0030126. PLoS Comput Biol. 2007. PMID: 17616982 Free PMC article.

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