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The transcription factor titration effect dictates level of gene expression.
Cell. 2014 Mar 13;156(6):1312-1323. doi: 10.1016/j.cell.2014.02.022. Epub 2014 Mar 6.
Cell. 2014.
PMID: 24612990
Free PMC article.
Statistical mechanical model of coupled transcription from multiple promoters due to transcription factor titration.
Rydenfelt M, Cox RS 3rd, Garcia H, Phillips R.
Rydenfelt M, et al.
Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Jan;89(1):012702. doi: 10.1103/PhysRevE.89.012702. Epub 2014 Jan 6.
Phys Rev E Stat Nonlin Soft Matter Phys. 2014.
PMID: 24580252
Free PMC article.
Item in Clipboard
The influence of promoter architectures and regulatory motifs on gene expression in Escherichia coli.
Rydenfelt M, Garcia HG, Cox RS 3rd, Phillips R.
Rydenfelt M, et al.
PLoS One. 2014 Dec 30;9(12):e114347. doi: 10.1371/journal.pone.0114347. eCollection 2014.
PLoS One. 2014.
PMID: 25549361
Free PMC article.
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Scaling of gene expression with transcription-factor fugacity.
Weinert FM, Brewster RC, Rydenfelt M, Phillips R, Kegel WK.
Weinert FM, et al. Among authors: rydenfelt m.
Phys Rev Lett. 2014 Dec 19;113(25):258101. doi: 10.1103/PhysRevLett.113.258101. Epub 2014 Dec 16.
Phys Rev Lett. 2014.
PMID: 25554908
Free PMC article.
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Oncogenic β-catenin and PIK3CA instruct network states and cancer phenotypes in intestinal organoids.
Riemer P, Rydenfelt M, Marks M, van Eunen K, Thedieck K, Herrmann BG, Blüthgen N, Sers C, Morkel M.
Riemer P, et al. Among authors: rydenfelt m.
J Cell Biol. 2017 Jun 5;216(6):1567-1577. doi: 10.1083/jcb.201610058. Epub 2017 Apr 25.
J Cell Biol. 2017.
PMID: 28442534
Free PMC article.
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SPEED2: inferring upstream pathway activity from differential gene expression.
Rydenfelt M, Klinger B, Klünemann M, Blüthgen N.
Rydenfelt M, et al.
Nucleic Acids Res. 2020 Jul 2;48(W1):W307-W312. doi: 10.1093/nar/gkaa236.
Nucleic Acids Res. 2020.
PMID: 32313938
Free PMC article.
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The cancer cell proteome and transcriptome predicts sensitivity to targeted and cytotoxic drugs.
Rydenfelt M, Wongchenko M, Klinger B, Yan Y, Blüthgen N.
Rydenfelt M, et al.
Life Sci Alliance. 2019 Jun 28;2(4):e201900445. doi: 10.26508/lsa.201900445. Print 2019 Aug.
Life Sci Alliance. 2019.
PMID: 31253656
Free PMC article.
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Classification of gene signatures for their information value and functional redundancy.
Cantini L, Calzone L, Martignetti L, Rydenfelt M, Blüthgen N, Barillot E, Zinovyev A.
Cantini L, et al. Among authors: rydenfelt m.
NPJ Syst Biol Appl. 2017 Dec 19;4:2. doi: 10.1038/s41540-017-0038-8. eCollection 2018.
NPJ Syst Biol Appl. 2017.
PMID: 29263798
Free PMC article.
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