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Phylogenetic analysis of SARS-CoV-2 in the Boston area highlights the role of recurrent importation and superspreading events.
Lemieux JE, Siddle KJ, Shaw BM, Loreth C, Schaffner SF, Gladden-Young A, Adams G, Fink T, Tomkins-Tinch CH, Krasilnikova LA, DeRuff KC, Rudy M, Bauer MR, Lagerborg KA, Normandin E, Chapman SB, Reilly SK, Anahtar MN, Lin AE, Carter A, Myhrvold C, Kemball ME, Chaluvadi S, Cusick C, Flowers K, Neumann A, Cerrato F, Farhat M, Slater D, Harris JB, Branda J, Hooper D, Gaeta JM, Baggett TP, O'Connell J, Gnirke A, Lieberman TD, Philippakis A, Burns M, Brown CM, Luban J, Ryan ET, Turbett SE, LaRocque RC, Hanage WP, Gallagher GR, Madoff LC, Smole S, Pierce VM, Rosenberg E, Sabeti PC, Park DJ, Maclnnis BL. Lemieux JE, et al. Among authors: sabeti pc. medRxiv [Preprint]. 2020 Aug 25:2020.08.23.20178236. doi: 10.1101/2020.08.23.20178236. medRxiv. 2020. PMID: 32869040 Free PMC article. Updated. Preprint.
Genome-wide SNP genotyping highlights the role of natural selection in Plasmodium falciparum population divergence.
Neafsey DE, Schaffner SF, Volkman SK, Park D, Montgomery P, Milner DA Jr, Lukens A, Rosen D, Daniels R, Houde N, Cortese JF, Tyndall E, Gates C, Stange-Thomann N, Sarr O, Ndiaye D, Ndir O, Mboup S, Ferreira MU, Moraes Sdo L, Dash AP, Chitnis CE, Wiegand RC, Hartl DL, Birren BW, Lander ES, Sabeti PC, Wirth DF. Neafsey DE, et al. Among authors: sabeti pc. Genome Biol. 2008;9(12):R171. doi: 10.1186/gb-2008-9-12-r171. Epub 2008 Dec 15. Genome Biol. 2008. PMID: 19077304 Free PMC article.
Population genetic study of the brain-derived neurotrophic factor (BDNF) gene.
Petryshen TL, Sabeti PC, Aldinger KA, Fry B, Fan JB, Schaffner SF, Waggoner SG, Tahl AR, Sklar P. Petryshen TL, et al. Among authors: sabeti pc. Mol Psychiatry. 2010 Aug;15(8):810-5. doi: 10.1038/mp.2009.24. Epub 2009 Mar 3. Mol Psychiatry. 2010. PMID: 19255578 Free PMC article.
Sequence-based association and selection scans identify drug resistance loci in the Plasmodium falciparum malaria parasite.
Park DJ, Lukens AK, Neafsey DE, Schaffner SF, Chang HH, Valim C, Ribacke U, Van Tyne D, Galinsky K, Galligan M, Becker JS, Ndiaye D, Mboup S, Wiegand RC, Hartl DL, Sabeti PC, Wirth DF, Volkman SK. Park DJ, et al. Among authors: sabeti pc. Proc Natl Acad Sci U S A. 2012 Aug 7;109(32):13052-7. doi: 10.1073/pnas.1210585109. Epub 2012 Jul 23. Proc Natl Acad Sci U S A. 2012. PMID: 22826220 Free PMC article.
Epidemiology. Emerging disease or diagnosis?
Gire SK, Stremlau M, Andersen KG, Schaffner SF, Bjornson Z, Rubins K, Hensley L, McCormick JB, Lander ES, Garry RF, Happi C, Sabeti PC. Gire SK, et al. Among authors: sabeti pc. Science. 2012 Nov 9;338(6108):750-2. doi: 10.1126/science.1225893. Science. 2012. PMID: 23139320 No abstract available.
Identifying recent adaptations in large-scale genomic data.
Grossman SR, Andersen KG, Shlyakhter I, Tabrizi S, Winnicki S, Yen A, Park DJ, Griesemer D, Karlsson EK, Wong SH, Cabili M, Adegbola RA, Bamezai RN, Hill AV, Vannberg FO, Rinn JL; 1000 Genomes Project; Lander ES, Schaffner SF, Sabeti PC. Grossman SR, et al. Among authors: sabeti pc. Cell. 2013 Feb 14;152(4):703-13. doi: 10.1016/j.cell.2013.01.035. Cell. 2013. PMID: 23415221 Free PMC article.
Genetic surveillance detects both clonal and epidemic transmission of malaria following enhanced intervention in Senegal.
Daniels R, Chang HH, Séne PD, Park DC, Neafsey DE, Schaffner SF, Hamilton EJ, Lukens AK, Van Tyne D, Mboup S, Sabeti PC, Ndiaye D, Wirth DF, Hartl DL, Volkman SK. Daniels R, et al. Among authors: sabeti pc. PLoS One. 2013 Apr 4;8(4):e60780. doi: 10.1371/journal.pone.0060780. Print 2013. PLoS One. 2013. PMID: 23593309 Free PMC article.
250 results