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Phenotypic categorization of genetic skin diseases reveals new relations between phenotypes, genes and pathways.
Sadreyev RI, Feramisco JD, Tsao H, Grishin NV. Sadreyev RI, et al. Bioinformatics. 2009 Nov 15;25(22):2891-6. doi: 10.1093/bioinformatics/btp538. Epub 2009 Sep 10. Bioinformatics. 2009. PMID: 19744994 Free PMC article.
Using homology relations within a database markedly boosts protein sequence similarity search.
Tong J, Sadreyev RI, Pei J, Kinch LN, Grishin NV. Tong J, et al. Proc Natl Acad Sci U S A. 2015 Jun 2;112(22):7003-8. doi: 10.1073/pnas.1424324112. Epub 2015 May 18. Proc Natl Acad Sci U S A. 2015. PMID: 26038555 Free PMC article.
Analysis of CASP8 targets, predictions and assessment methods.
Shi S, Pei J, Sadreyev RI, Kinch LN, Majumdar I, Tong J, Cheng H, Kim BH, Grishin NV. Shi S, et al. Database (Oxford). 2009;2009:bap003. doi: 10.1093/database/bap003. Epub 2009 Apr 14. Database (Oxford). 2009. PMID: 20157476 Free PMC article.
PROCAIN server for remote protein sequence similarity search.
Wang Y, Sadreyev RI, Grishin NV. Wang Y, et al. Bioinformatics. 2009 Aug 15;25(16):2076-7. doi: 10.1093/bioinformatics/btp346. Epub 2009 Jun 3. Bioinformatics. 2009. PMID: 19497935 Free PMC article.
Discrete-continuous duality of protein structure space.
Sadreyev RI, Kim BH, Grishin NV. Sadreyev RI, et al. Curr Opin Struct Biol. 2009 Jun;19(3):321-8. doi: 10.1016/ Epub 2009 May 29. Curr Opin Struct Biol. 2009. PMID: 19482467 Free PMC article. Review.
COMPASS server for homology detection: improved statistical accuracy, speed and functionality.
Sadreyev RI, Tang M, Kim BH, Grishin NV. Sadreyev RI, et al. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W90-4. doi: 10.1093/nar/gkp360. Epub 2009 May 12. Nucleic Acids Res. 2009. PMID: 19435884 Free PMC article.
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