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Manipulating multiple sequence alignments via MaM and WebMaM.
Alkan C, Tüzün E, Buard J, Lethiec F, Eichler EE, Bailey JA, Sahinalp SC. Alkan C, et al. Among authors: sahinalp sc. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W295-8. doi: 10.1093/nar/gki406. Nucleic Acids Res. 2005. PMID: 15980474 Free PMC article.
taveRNA: a web suite for RNA algorithms and applications.
Aksay C, Salari R, Karakoc E, Alkan C, Sahinalp SC. Aksay C, et al. Among authors: sahinalp sc. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W325-9. doi: 10.1093/nar/gkm303. Epub 2007 May 8. Nucleic Acids Res. 2007. PMID: 17488837 Free PMC article.
Sensitive and fast mapping of di-base encoded reads.
Hormozdiari F, Hach F, Sahinalp SC, Eichler EE, Alkan C. Hormozdiari F, et al. Among authors: sahinalp sc. Bioinformatics. 2011 Jul 15;27(14):1915-21. doi: 10.1093/bioinformatics/btr303. Epub 2011 May 17. Bioinformatics. 2011. PMID: 21586516 Free PMC article.
149 results