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Prediction of transcriptional regulatory sites in the complete genome sequence of Escherichia coli K-12.
Thieffry D, Salgado H, Huerta AM, Collado-Vides J. Thieffry D, et al. Among authors: salgado h. Bioinformatics. 1998 Jun;14(5):391-400. doi: 10.1093/bioinformatics/14.5.391. Bioinformatics. 1998. PMID: 9682052
Syntactic recognition of regulatory regions in Escherichia coli.
Rosenblueth DA, Thieffry D, Huerta AM, Salgado H, Collado-Vides J. Rosenblueth DA, et al. Among authors: salgado h. Comput Appl Biosci. 1996 Oct;12(5):415-22. doi: 10.1093/bioinformatics/12.5.415. Comput Appl Biosci. 1996. PMID: 8996790
Definite-clause grammars for the analysis of cis-regulatory regions in E. coli.
Thieffry D, Rosenblueth DA, Huerta AM, Salgado H, Collado-Vides J. Thieffry D, et al. Among authors: salgado h. Pac Symp Biocomput. 1997:441-52. Pac Symp Biocomput. 1997. PMID: 9390313
RegulonDB: a database on transcriptional regulation in Escherichia coli.
Huerta AM, Salgado H, Thieffry D, Collado-Vides J. Huerta AM, et al. Among authors: salgado h. Nucleic Acids Res. 1998 Jan 1;26(1):55-9. doi: 10.1093/nar/26.1.55. Nucleic Acids Res. 1998. PMID: 9399800 Free PMC article.
RegulonDB (version 2.0): a database on transcriptional regulation in Escherichia coli.
Salgado H, Santos A, Garza-Ramos U, van Helden J, Díaz E, Collado-Vides J. Salgado H, et al. Nucleic Acids Res. 1999 Jan 1;27(1):59-60. doi: 10.1093/nar/27.1.59. Nucleic Acids Res. 1999. PMID: 9847141 Free PMC article.
RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12.
Salgado H, Santos-Zavaleta A, Gama-Castro S, Millán-Zárate D, Blattner FR, Collado-Vides J. Salgado H, et al. Nucleic Acids Res. 2000 Jan 1;28(1):65-7. doi: 10.1093/nar/28.1.65. Nucleic Acids Res. 2000. PMID: 10592182 Free PMC article.
Operons in Escherichia coli: genomic analyses and predictions.
Salgado H, Moreno-Hagelsieb G, Smith TF, Collado-Vides J. Salgado H, et al. Proc Natl Acad Sci U S A. 2000 Jun 6;97(12):6652-7. doi: 10.1073/pnas.110147297. Proc Natl Acad Sci U S A. 2000. PMID: 10823905 Free PMC article.
RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12.
Salgado H, Santos-Zavaleta A, Gama-Castro S, Millán-Zárate D, Díaz-Peredo E, Sánchez-Solano F, Pérez-Rueda E, Bonavides-Martínez C, Collado-Vides J. Salgado H, et al. Nucleic Acids Res. 2001 Jan 1;29(1):72-4. doi: 10.1093/nar/29.1.72. Nucleic Acids Res. 2001. PMID: 11125053 Free PMC article.
The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments.
González V, Bustos P, Ramírez-Romero MA, Medrano-Soto A, Salgado H, Hernández-González I, Hernández-Celis JC, Quintero V, Moreno-Hagelsieb G, Girard L, Rodríguez O, Flores M, Cevallos MA, Collado-Vides J, Romero D, Dávila G. González V, et al. Among authors: salgado h. Genome Biol. 2003;4(6):R36. doi: 10.1186/gb-2003-4-6-r36. Epub 2003 May 13. Genome Biol. 2003. PMID: 12801410 Free PMC article.
RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12.
Salgado H, Gama-Castro S, Martínez-Antonio A, Díaz-Peredo E, Sánchez-Solano F, Peralta-Gil M, Garcia-Alonso D, Jiménez-Jacinto V, Santos-Zavaleta A, Bonavides-Martínez C, Collado-Vides J. Salgado H, et al. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D303-6. doi: 10.1093/nar/gkh140. Nucleic Acids Res. 2004. PMID: 14681419 Free PMC article.
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