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Prediction of protein secondary structure at better than 70% accuracy.
Rost B, Sander C. Rost B, et al. J Mol Biol. 1993 Jul 20;232(2):584-99. doi: 10.1006/jmbi.1993.1413. J Mol Biol. 1993. PMID: 8345525
Progress in protein structure prediction?
Rost B, Schneider R, Sander C. Rost B, et al. Trends Biochem Sci. 1993 Apr;18(4):120-3. doi: 10.1016/0968-0004(93)90017-h. Trends Biochem Sci. 1993. PMID: 8493721
The modular structure of NifU proteins.
Ouzounis C, Bork P, Sander C. Ouzounis C, et al. Trends Biochem Sci. 1994 May;19(5):199-200. doi: 10.1016/0968-0004(94)90021-3. Trends Biochem Sci. 1994. PMID: 8048161 Review. No abstract available.
Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function.
Andrade M, Casari G, de Daruvar A, Sander C, Schneider R, Tamames J, Valencia A, Ouzounis C. Andrade M, et al. Comput Appl Biosci. 1997 Aug;13(4):481-3. doi: 10.1093/bioinformatics/13.4.481. Comput Appl Biosci. 1997. PMID: 9283767 No abstract available.
Objectively judging the quality of a protein structure from a Ramachandran plot.
Hooft RW, Sander C, Vriend G. Hooft RW, et al. Comput Appl Biosci. 1997 Aug;13(4):425-30. doi: 10.1093/bioinformatics/13.4.425. Comput Appl Biosci. 1997. PMID: 9283757
Mapping the protein universe.
Holm L, Sander C. Holm L, et al. Science. 1996 Aug 2;273(5275):595-603. doi: 10.1126/science.273.5275.595. Science. 1996. PMID: 8662544 Review.
GeneQuiz: a workbench for sequence analysis.
Scharf M, Schneider R, Casari G, Bork P, Valencia A, Ouzounis C, Sander C. Scharf M, et al. Proc Int Conf Intell Syst Mol Biol. 1994;2:348-53. Proc Int Conf Intell Syst Mol Biol. 1994. PMID: 7584411
The prototype system consists of two parts: (i) the database update and search system (driven by perl programs and rdb, a simple relational database engine also written in perl) and (ii) the visualization and browsing system (developed under C++/ET++). ...
The prototype system consists of two parts: (i) the database update and search system (driven by perl programs and rdb, a simple relational …
3-D lookup: fast protein structure database searches at 90% reliability.
Holm L, Sander C. Holm L, et al. Proc Int Conf Intell Syst Mol Biol. 1995;3:179-87. Proc Int Conf Intell Syst Mol Biol. 1995. PMID: 7584435
The superimposition is then extended to an alignment of C alpha atoms by an iterative dynamic programming step. An all-against-all comparison of 385 representative proteins (150,000 pair comparisons) took 1 day of computer time on a single R8000 processor. ...
The superimposition is then extended to an alignment of C alpha atoms by an iterative dynamic programming step. An all-against-all co …
Third generation prediction of secondary structures.
Rost B, Sander C. Rost B, et al. Methods Mol Biol. 2000;143:71-95. doi: 10.1385/1-59259-368-2:71. Methods Mol Biol. 2000. PMID: 11084903 No abstract available.
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