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Page 1
Translon: a single term for translated regions.
Świrski MI, Tierney JAS, Albà MM, Andreev DE, Aspden JL, Atkins JF, Bassani-Sternberg M, Berry MJ, Biffo S, Boris-Lawrie K, Borodovsky M, Brierley I, Brook M, Brunet MA, Bujnicki JM, Caliskan N, Calviello L, Carvunis AR, Cate JHD, Cenik C, Chang KY, Chen Y, Chothani S, Choudhary JS, Clark PL, Clauwaert J, Cooley L, Dassi E, Dean K, Diaz JJ, Dieterich C, Dikstein R, Dinman JD, Dmitriev SE, Dontsova OA, Dunham CM, Eswarappa SM, Farabaugh PJ, Faridi P, Fierro-Monti I, Firth AE, Gatfield D, Gebauer F, Gelfand MS, Gray NK, Green R, Hill CH, Hou YM, Hübner N, Ignatova Z, Ivanov P, Iwasaki S, Johnson R, Jomaa A, Jovanovic M, Jungreis I, Kellis M, Kieft JS, Kochetov AV, Koonin EV, Korostelev AA, Kufel J, Kulakovskiy IV, Kurian L, Lafontaine DLJ, Larsson O, Loughran G, Lukeš J, Mariotti M, Martens-Uzunova ES, Martinez TF, Matsumoto A, McManus J, Medenbach J, Melnikov SV, Menschaert G, Merchante C, Mikl M, Miller WA, Mühlemann O, Namy O, Nedialkova DD, Nosek J, Orchard S, Ozretić P, Pertea M, Pervouchine DD, Romão L, Ron D, Roucou X, Rubtsova MP, Ruiz-Orera J, Saghatelian A, Salzberg SL, Seale LA, Seoighe C, Sergiev PV, Shah P, Shirokikh N, Slavoff SA, Sonenberg N, Stasevich TJ, Szcz… See abstract for full author list ➔ Świrski MI, et al. Among authors: slavoff sa. Nat Methods. 2025 Oct;22(10):2002-2006. doi: 10.1038/s41592-025-02810-3. Nat Methods. 2025. PMID: 40890551 No abstract available.
LZTR1 is a melanoma oncogene that promotes invasion and suppresses apoptosis.
Bacchiocchi A, Mak M, Khan ZM, Gong X, Sznol M, Na Z, Su H, Chan LH, Yan Q, Zhao D, Mortlock RD, Knight J, Slavoff SA, Halaban R. Bacchiocchi A, et al. Among authors: slavoff sa. Oncogene. 2025 Oct;44(41):3974-3984. doi: 10.1038/s41388-025-03538-2. Epub 2025 Aug 30. Oncogene. 2025. PMID: 40885854 Free PMC article.
The ERVK3-1 Microprotein Interacts with the HUSH Complex.
Jayatissa A, Jaunbocus N, Erkalo B, Jiang K, Zheng SJ, Su H, Yan L, Choi JY, Vaughan J, Bacchiocchi A, Na Z, Cao X, Halaban R, Saghatelian A, Craft J, Chen YG, Slavoff SA. Jayatissa A, et al. Among authors: slavoff sa. Biochemistry. 2025 Aug 5;64(15):3372-3381. doi: 10.1021/acs.biochem.5c00023. Epub 2025 Jul 23. Biochemistry. 2025. PMID: 40699144 Free PMC article.
An expanded reference catalog of translated open reading frames for biomedical research.
Chothani S, Ruiz-Orera J, Tierney JAS, Clauwaert J, Deutsch EW, Alba MM, Aspden JL, Baranov PV, Bazzini AA, Bruford EA, Brunet MA, Cardon T, Carvunis AR, Casola C, Choudhary JS, Dean K, Faridi P, Fierro-Monti I, Fournier I, Frankish A, Gerstein M, Hubner N, Jiang Y, Kellis M, Kok LW, Martinez TF, Menschaert G, Ni P, Orchard S, Roucou X, Rozowsky J, Salzet M, Siragusa M, Slavoff S, Swirski MI, Valen E, Vizcaino JA, Wacholder A, Wu W, Xie Z, Yang YT, Moritz RL, Mudge J, van Heesch S, Prensner JR, Rackham OJ. Chothani S, et al. Among authors: slavoff s. bioRxiv [Preprint]. 2025 Jul 7:2025.07.03.662928. doi: 10.1101/2025.07.03.662928. bioRxiv. 2025. PMID: 40672165 Free PMC article. Preprint.
Eukaryotic Microproteins.
Jaunbocus N, Ebenki V, Su H, Slavoff SA. Jaunbocus N, et al. Among authors: slavoff sa. Annu Rev Biochem. 2025 Jun;94(1):1-28. doi: 10.1146/annurev-biochem-080124-012840. Epub 2025 Apr 17. Annu Rev Biochem. 2025. PMID: 40245354 Free article. Review.
Detection of human unannotated microproteins by mass spectrometry-based proteomics: a community assessment.
Wacholder A, Deutsch EW, Kok LW, van Dinter JT, Lee J, Wright JC, Leblanc S, Jayatissa AH, Jiang K, Arefiev I, Cao K, Bourassa F, Trifiro FA, Bassani-Sternberg M, Baranov PV, Bogaert A, Chothani S, Fierro-Monti I, Fijalkowska D, Gevaert K, Hubner N, Mudge JM, Ruiz-Orera J, Schulz J, Vizcaíno JA, Prensner JR, Brunet MA, Martinez TF, Slavoff SA, Roucou X, Choudhary JS, van Heesch S, Moritz RL, Carvunis AR. Wacholder A, et al. Among authors: slavoff sa. bioRxiv [Preprint]. 2025 Jul 27:2025.02.19.639069. doi: 10.1101/2025.02.19.639069. bioRxiv. 2025. PMID: 40027765 Free PMC article. Preprint.
High-quality peptide evidence for annotating non-canonical open reading frames as human proteins.
Deutsch EW, Kok LW, Mudge JM, Ruiz-Orera J, Fierro-Monti I, Sun Z, Abelin JG, Alba MM, Aspden JL, Bazzini AA, Bruford EA, Brunet MA, Calviello L, Carr SA, Carvunis AR, Chothani S, Clauwaert J, Dean K, Faridi P, Frankish A, Hubner N, Ingolia NT, Magrane M, Martin MJ, Martinez TF, Menschaert G, Ohler U, Orchard S, Rackham O, Roucou X, Slavoff SA, Valen E, Wacholder A, Weissman JS, Wu W, Xie Z, Choudhary J, Bassani-Sternberg M, Vizcaíno JA, Ternette N, Moritz RL, Prensner JR, van Heesch S. Deutsch EW, et al. Among authors: slavoff sa. bioRxiv [Preprint]. 2025 Jul 24:2024.09.09.612016. doi: 10.1101/2024.09.09.612016. bioRxiv. 2025. PMID: 39314370 Free PMC article. Preprint.
Cellular function of the GndA microprotein during heat shock.
Mohsen JJ, Mohsen MG, Jiang K, Quinto L, Landajuela A, Karatekin E, Isaacs FJ, Slavoff SA. Mohsen JJ, et al. Among authors: slavoff sa. bioRxiv [Preprint]. 2025 Jul 8:2024.06.29.601336. doi: 10.1101/2024.06.29.601336. bioRxiv. 2025. PMID: 38979229 Free PMC article. Preprint.
ALKBH5 modulates hematopoietic stem and progenitor cell energy metabolism through m6A modification-mediated RNA stability control.
Gao Y, Zimmer JT, Vasic R, Liu C, Gbyli R, Zheng SJ, Patel A, Liu W, Qi Z, Li Y, Nelakanti R, Song Y, Biancon G, Xiao AZ, Slavoff S, Kibbey RG, Flavell RA, Simon MD, Tebaldi T, Li HB, Halene S. Gao Y, et al. Among authors: slavoff s. Cell Rep. 2023 Oct 31;42(10):113163. doi: 10.1016/j.celrep.2023.113163. Epub 2023 Sep 23. Cell Rep. 2023. PMID: 37742191 Free PMC article.
46 results