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The HIVToolbox 2 web system integrates sequence, structure, function and mutation analysis.
Sargeant DP, Deverasetty S, Strong CL, Alaniz IJ, Bartlett A, Brandon NR, Brooks SB, Brown FA, Bufi F, Chakarova M, David RP, Dobritch KM, Guerra HP, Hedden MW, Kumra R, Levitt KS, Mathew KR, Matti R, Maza DQ, Mistry S, Novakovic N, Pomerantz A, Portillo J, Rafalski TF, Rathnayake VR, Rezapour N, Songao S, Tuggle SL, Yousif S, Dorsky DI, Schiller MR. Sargeant DP, et al. PLoS One. 2014 Jun 2;9(6):e98810. doi: 10.1371/journal.pone.0098810. eCollection 2014. PLoS One. 2014. PMID: 24886930 Free PMC article.
The Geogenomic Mutational Atlas of Pathogens (GoMAP) web system.
Sargeant DP, Hedden MW, Deverasetty S, Strong CL, Alaniz IJ, Bartlett AN, Brandon NR, Brooks SB, Brown FA, Bufi F, Chakarova M, David RP, Dobritch KM, Guerra HP, Levit KS, Mathew KR, Matti R, Maza DQ, Mistry S, Novakovic N, Pomerantz A, Rafalski TF, Rathnayake V, Rezapour N, Ross CA, Schooler SG, Songao S, Tuggle SL, Wing HJ, Yousif S, Schiller MR. Sargeant DP, et al. PLoS One. 2014 Mar 27;9(3):e92877. doi: 10.1371/journal.pone.0092877. eCollection 2014. PLoS One. 2014. PMID: 24675726 Free PMC article.
HIVToolbox, an integrated web application for investigating HIV.
Sargeant D, Deverasetty S, Luo Y, Villahoz Baleta A, Zobrist S, Rathnayake V, Russo JC, Vyas J, Muesing MA, Schiller MR. Sargeant D, et al. PLoS One. 2011;6(5):e20122. doi: 10.1371/journal.pone.0020122. Epub 2011 May 25. PLoS One. 2011. PMID: 21647445 Free PMC article.
Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences.
Mi T, Merlin JC, Deverasetty S, Gryk MR, Bill TJ, Brooks AW, Lee LY, Rathnayake V, Ross CA, Sargeant DP, Strong CL, Watts P, Rajasekaran S, Schiller MR. Mi T, et al. Among authors: sargeant dp. Nucleic Acids Res. 2012 Jan;40(Database issue):D252-60. doi: 10.1093/nar/gkr1189. Epub 2011 Dec 6. Nucleic Acids Res. 2012. PMID: 22146221 Free PMC article.
MimoSA: a system for minimotif annotation.
Vyas J, Nowling RJ, Meusburger T, Sargeant D, Kadaveru K, Gryk MR, Kundeti V, Rajasekaran S, Schiller MR. Vyas J, et al. BMC Bioinformatics. 2010 Jun 16;11:328. doi: 10.1186/1471-2105-11-328. BMC Bioinformatics. 2010. PMID: 20565705 Free PMC article.