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The HIVToolbox 2 web system integrates sequence, structure, function and mutation analysis.
PLoS One. 2014 Jun 2;9(6):e98810. doi: 10.1371/journal.pone.0098810. eCollection 2014.
PLoS One. 2014.
PMID: 24886930
Free PMC article.
The Geogenomic Mutational Atlas of Pathogens (GoMAP) web system.
Sargeant DP, Hedden MW, Deverasetty S, Strong CL, Alaniz IJ, Bartlett AN, Brandon NR, Brooks SB, Brown FA, Bufi F, Chakarova M, David RP, Dobritch KM, Guerra HP, Levit KS, Mathew KR, Matti R, Maza DQ, Mistry S, Novakovic N, Pomerantz A, Rafalski TF, Rathnayake V, Rezapour N, Ross CA, Schooler SG, Songao S, Tuggle SL, Wing HJ, Yousif S, Schiller MR.
Sargeant DP, et al.
PLoS One. 2014 Mar 27;9(3):e92877. doi: 10.1371/journal.pone.0092877. eCollection 2014.
PLoS One. 2014.
PMID: 24675726
Free PMC article.
Item in Clipboard
HIVToolbox, an integrated web application for investigating HIV.
Sargeant D, Deverasetty S, Luo Y, Villahoz Baleta A, Zobrist S, Rathnayake V, Russo JC, Vyas J, Muesing MA, Schiller MR.
Sargeant D, et al.
PLoS One. 2011;6(5):e20122. doi: 10.1371/journal.pone.0020122. Epub 2011 May 25.
PLoS One. 2011.
PMID: 21647445
Free PMC article.
Item in Clipboard
Secondary structure, a missing component of sequence-based minimotif definitions.
Sargeant DP, Gryk MR, Maciejewski MW, Thapar V, Kundeti V, Rajasekaran S, Romero P, Dunker K, Li SC, Kaneko T, Schiller MR.
Sargeant DP, et al.
PLoS One. 2012;7(12):e49957. doi: 10.1371/journal.pone.0049957. Epub 2012 Dec 7.
PLoS One. 2012.
PMID: 23236358
Free PMC article.
Item in Clipboard
Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences.
Mi T, Merlin JC, Deverasetty S, Gryk MR, Bill TJ, Brooks AW, Lee LY, Rathnayake V, Ross CA, Sargeant DP, Strong CL, Watts P, Rajasekaran S, Schiller MR.
Mi T, et al. Among authors: sargeant dp.
Nucleic Acids Res. 2012 Jan;40(Database issue):D252-60. doi: 10.1093/nar/gkr1189. Epub 2011 Dec 6.
Nucleic Acids Res. 2012.
PMID: 22146221
Free PMC article.
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MimoSA: a system for minimotif annotation.
Vyas J, Nowling RJ, Meusburger T, Sargeant D, Kadaveru K, Gryk MR, Kundeti V, Rajasekaran S, Schiller MR.
Vyas J, et al.
BMC Bioinformatics. 2010 Jun 16;11:328. doi: 10.1186/1471-2105-11-328.
BMC Bioinformatics. 2010.
PMID: 20565705
Free PMC article.
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