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A draft map of the human proteome.
Kim MS, Pinto SM, Getnet D, Nirujogi RS, Manda SS, Chaerkady R, Madugundu AK, Kelkar DS, Isserlin R, Jain S, Thomas JK, Muthusamy B, Leal-Rojas P, Kumar P, Sahasrabuddhe NA, Balakrishnan L, Advani J, George B, Renuse S, Selvan LD, Patil AH, Nanjappa V, Radhakrishnan A, Prasad S, Subbannayya T, Raju R, Kumar M, Sreenivasamurthy SK, Marimuthu A, Sathe GJ, Chavan S, Datta KK, Subbannayya Y, Sahu A, Yelamanchi SD, Jayaram S, Rajagopalan P, Sharma J, Murthy KR, Syed N, Goel R, Khan AA, Ahmad S, Dey G, Mudgal K, Chatterjee A, Huang TC, Zhong J, Wu X, Shaw PG, Freed D, Zahari MS, Mukherjee KK, Shankar S, Mahadevan A, Lam H, Mitchell CJ, Shankar SK, Satishchandra P, Schroeder JT, Sirdeshmukh R, Maitra A, Leach SD, Drake CG, Halushka MK, Prasad TS, Hruban RH, Kerr CL, Bader GD, Iacobuzio-Donahue CA, Gowda H, Pandey A. Kim MS, et al. Nature. 2014 May 29;509(7502):575-81. doi: 10.1038/nature13302. Nature. 2014. PMID: 24870542 Free PMC article.
Quantitative proteomics for identifying biomarkers for tuberculous meningitis.
Kumar GS, Venugopal AK, Mahadevan A, Renuse S, Harsha HC, Sahasrabuddhe NA, Pawar H, Sharma R, Kumar P, Rajagopalan S, Waddell K, Ramachandra YL, Satishchandra P, Chaerkady R, Prasad TS, Shankar K, Pandey A. Kumar GS, et al. Clin Proteomics. 2012 Nov 30;9(1):12. doi: 10.1186/1559-0275-9-12. Clin Proteomics. 2012. PMID: 23198679 Free PMC article.
Quantitative proteomics for identifying biomarkers for Rabies.
Venugopal AK, Ghantasala SS, Selvan LD, Mahadevan A, Renuse S, Kumar P, Pawar H, Sahasrabhuddhe NA, Suja MS, Ramachandra YL, Prasad TS, Madhusudhana SN, Hc H, Chaerkady R, Satishchandra P, Pandey A, Shankar SK. Venugopal AK, et al. Clin Proteomics. 2013 Mar 22;10(1):3. doi: 10.1186/1559-0275-10-3. Clin Proteomics. 2013. PMID: 23521751 Free PMC article.
Host response profile of human brain proteome in toxoplasma encephalitis co-infected with HIV.
Sahu A, Kumar S, Sreenivasamurthy SK, Selvan LD, Madugundu AK, Yelamanchi SD, Puttamallesh VN, Dey G, Anil AK, Srinivasan A, Mukherjee KK, Gowda H, Satishchandra P, Mahadevan A, Pandey A, Prasad TS, Shankar SK. Sahu A, et al. Clin Proteomics. 2014 Nov 1;11(1):39. doi: 10.1186/1559-0275-11-39. eCollection 2014. Clin Proteomics. 2014. PMID: 25404878 Free PMC article.
Characterization of host response to Cryptococcus neoformans through quantitative proteomic analysis of cryptococcal meningitis co-infected with HIV.
Selvan LD, Sreenivasamurthy SK, Kumar S, Yelamanchi SD, Madugundu AK, Anil AK, Renuse S, Nair BG, Gowda H, Mathur PP, Satishchandra P, Shankar SK, Mahadevan A, Keshava Prasad TS. Selvan LD, et al. Mol Biosyst. 2015 Sep;11(9):2529-40. doi: 10.1039/c5mb00187k. Mol Biosyst. 2015. PMID: 26181685
Quantitative Proteomic and Phosphoproteomic Analysis of H37Ra and H37Rv Strains of Mycobacterium tuberculosis.
Verma R, Pinto SM, Patil AH, Advani J, Subba P, Kumar M, Sharma J, Dey G, Ravikumar R, Buggi S, Satishchandra P, Sharma K, Suar M, Tripathy SP, Chauhan DS, Gowda H, Pandey A, Gandotra S, Prasad TS. Verma R, et al. J Proteome Res. 2017 Apr 7;16(4):1632-1645. doi: 10.1021/acs.jproteome.6b00983. Epub 2017 Mar 20. J Proteome Res. 2017. PMID: 28241730
Proteomic Analysis of the Human Anterior Pituitary Gland.
Yelamanchi SD, Tyagi A, Mohanty V, Dutta P, Korbonits M, Chavan S, Advani J, Madugundu AK, Dey G, Datta KK, Rajyalakshmi M, Sahasrabuddhe NA, Chaturvedi A, Kumar A, Das AA, Ghosh D, Jogdand GM, Nair HH, Saini K, Panchal M, Sarvaiya MA, Mohanraj SS, Sengupta N, Saxena P, Subramani PA, Kumar P, Akkali R, Reshma SV, Santhosh RS, Rastogi S, Kumar S, Ghosh SK, Irlapati VK, Srinivasan A, Radotra BD, Mathur PP, Wong GW, Satishchandra P, Chatterjee A, Gowda H, Bhansali A, Pandey A, Shankar SK, Mahadevan A, Prasad TSK. Yelamanchi SD, et al. Among authors: Satishchandra P. OMICS. 2018 Dec;22(12):759-769. doi: 10.1089/omi.2018.0160. OMICS. 2018. PMID: 30571610 Free PMC article.
Transcriptomic Profiling of Medial Temporal Lobe Epilepsy.
Venugopal AK, Sameer Kumar GS, Mahadevan A, Selvan LD, Marimuthu A, Dikshit JB, Tata P, Ramachandra Y, Chaerkady R, Sinha S, Chandramouli B, Arivazhagan A, Satishchandra P, Shankar S, Pandey A. Venugopal AK, et al. J Proteomics Bioinform. 2012 Jan 30;5(2):1000210. doi: 10.4172/jpb.1000210. J Proteomics Bioinform. 2012. PMID: 23483634 Free PMC article.
Progressive multifocal leukoencephalopathy (PML) associated with HIV Clade C--is not uncommon.
Netravathi M, Mahadevan A, Satishchandra P, Shobha N, Mailankody P, Kandavel T, Jitender S, Anantaram G, Nagarathna S, Govekar S, Ravikumar BV, Ravi V, Shankar SK. Netravathi M, et al. J Neurovirol. 2013 Jun;19(3):198-208. doi: 10.1007/s13365-013-0168-8. Epub 2013 May 23. J Neurovirol. 2013. PMID: 23700233 Review.
Gene Expression Profiling of Tuberculous Meningitis Co-infected with HIV.
Kumar GS, Venugopal AK, Kashyap MK, Raju R, Marimuthu A, Palapetta SM, Subbanayya Y, Goel R, Chawla A, Dikshit JB, Tata P, Harsha HC, Maharudraiah J, Ramachandra YL, Satishchandra P, Prasad TS, Pandey A, Mahadevan A, Shankar SK. Kumar GS, et al. J Proteomics Bioinform. 2012 Sep;5(9):235-244. doi: 10.4172/jpb.1000243. Epub 2012 Sep 9. J Proteomics Bioinform. 2012. PMID: 27053842 Free PMC article.
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