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Avoiding recomputation in linkage analysis.
Schäffer AA, Gupta SK, Shriram K, Cottingham RW Jr. Schäffer AA, et al. Hum Hered. 1994 Jul-Aug;44(4):225-37. doi: 10.1159/000154222. Hum Hered. 1994. PMID: 8056435
Coordinated conditional simulation with SLINK and SUP of many markers linked or associated to a trait in large pedigrees.
Schäffer AA, Lemire M, Ott J, Lathrop GM, Weeks DE. Schäffer AA, et al. Hum Hered. 2011;71(2):126-34. doi: 10.1159/000324177. Epub 2011 Jul 6. Hum Hered. 2011. PMID: 21734403 Free PMC article.
PSEUDOMARKER: a powerful program for joint linkage and/or linkage disequilibrium analysis on mixtures of singletons and related individuals.
Hiekkalinna T, Schäffer AA, Lambert B, Norrgrann P, Göring HH, Terwilliger JD. Hiekkalinna T, et al. Among authors: schaffer aa. Hum Hered. 2011;71(4):256-66. doi: 10.1159/000329467. Epub 2011 Jul 28. Hum Hered. 2011. PMID: 21811076 Free PMC article.
Faster linkage analysis computations for pedigrees with loops or unused alleles.
Schäffer AA. Schäffer AA. Hum Hered. 1996 Jul-Aug;46(4):226-35. doi: 10.1159/000154358. Hum Hered. 1996. PMID: 8807326
Automatic selection of loop breakers for genetic linkage analysis.
Becker A, Geiger D, Schäffer AA. Becker A, et al. Among authors: schaffer aa. Hum Hered. 1998 Jan-Feb;48(1):49-60. doi: 10.1159/000022781. Hum Hered. 1998. PMID: 9463802
Linkage analyses in type I diabetes mellitus using CASPAR, a software and statistical program for conditional analysis of polygenic diseases.
Buhler J, Owerbach D, Schäffer AA, Kimmel M, Gabbay KH. Buhler J, et al. Among authors: schaffer aa. Hum Hered. 1997 Jul-Aug;47(4):211-22. doi: 10.1159/000154415. Hum Hered. 1997. PMID: 9239508
Improving the practical space and time efficiency of the shortest-paths approach to sum-of-pairs multiple sequence alignment.
Gupta SK, Kececioglu JD, Schäffer AA. Gupta SK, et al. Among authors: schaffer aa. J Comput Biol. 1995 Fall;2(3):459-72. doi: 10.1089/cmb.1995.2.459. J Comput Biol. 1995. PMID: 8521275
Faster sequential genetic linkage computations.
Cottingham RW Jr, Idury RM, Schäffer AA. Cottingham RW Jr, et al. Among authors: schaffer aa. Am J Hum Genet. 1993 Jul;53(1):252-63. Am J Hum Genet. 1993. PMID: 8317490 Free PMC article.
Integrating parallelization strategies for linkage analysis.
Gupta SK, Schäffer AA, Cox AL, Dwarkadas S, Zwaenepoel W. Gupta SK, et al. Among authors: schaffer aa. Comput Biomed Res. 1995 Apr;28(2):116-39. doi: 10.1006/cbmr.1995.1009. Comput Biomed Res. 1995. PMID: 7656549
Parallelization of general-linkage analysis problems.
Dwarkadas S, Schäffer AA, Cottingham RW Jr, Cox AL, Keleher P, Zwaenepoel W. Dwarkadas S, et al. Among authors: schaffer aa. Hum Hered. 1994 May-Jun;44(3):127-41. doi: 10.1159/000154205. Hum Hered. 1994. PMID: 8039796
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