Schaap PJ - Search Results

1

Novel tools for extraction and validation of disease-related mutations applied to Fabry disease.

Kuipers R, van den Bergh T, Joosten HJ, Lekanne dit Deprez RH, Mannens MM, Schaap PJ. Kuipers R, et al. Among authors: schaap pj. Hum Mutat. 2010 Sep;31(9):1026-32. doi: 10.1002/humu.21317. Hum Mutat. 2010. PMID: 20629180

2

Correlated mutation analyses on super-family alignments reveal functionally important residues.

Kuipers RK, Joosten HJ, Verwiel E, Paans S, Akerboom J, van der Oost J, Leferink NG, van Berkel WJ, Vriend G, Schaap PJ. Kuipers RK, et al. Among authors: schaap pj. Proteins. 2009 Aug 15;76(3):608-16. doi: 10.1002/prot.22374. Proteins. 2009. PMID: 19274741

3

3DM: systematic analysis of heterogeneous superfamily data to discover protein functionalities.

Kuipers RK, Joosten HJ, van Berkel WJ, Leferink NG, Rooijen E, Ittmann E, van Zimmeren F, Jochens H, Bornscheuer U, Vriend G, dos Santos VA, Schaap PJ. Kuipers RK, et al. Among authors: schaap pj. Proteins. 2010 Jul;78(9):2101-13. doi: 10.1002/prot.22725. Proteins. 2010. PMID: 20455266

4

CorNet: Assigning function to networks of co-evolving residues by automated literature mining.

van den Bergh T, Tamo G, Nobili A, Tao Y, Tan T, Bornscheuer UT, Kuipers RKP, Vroling B, de Jong RM, Subramanian K, Schaap PJ, Desmet T, Nidetzky B, Vriend G, Joosten HJ. van den Bergh T, et al. Among authors: schaap pj. PLoS One. 2017 May 18;12(5):e0176427. doi: 10.1371/journal.pone.0176427. eCollection 2017. PLoS One. 2017. PMID: 28545124 Free PMC article.

5

Aminopeptidase C of Aspergillus niger is a novel phenylalanine aminopeptidase.

Basten DE, Dekker PJ, Schaap PJ. Basten DE, et al. Among authors: schaap pj. Appl Environ Microbiol. 2003 Feb;69(2):1246-50. doi: 10.1128/aem.69.2.1246-1250.2003. Appl Environ Microbiol. 2003. PMID: 12571053 Free PMC article.

6

An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data.

Braaksma M, Martens-Uzunova ES, Punt PJ, Schaap PJ. Braaksma M, et al. Among authors: schaap pj. BMC Genomics. 2010 Oct 19;11:584. doi: 10.1186/1471-2164-11-584. BMC Genomics. 2010. PMID: 20959013 Free PMC article.

7

Identification of fungal oxaloacetate hydrolyase within the isocitrate lyase/PEP mutase enzyme superfamily using a sequence marker-based method.

Joosten HJ, Han Y, Niu W, Vervoort J, Dunaway-Mariano D, Schaap PJ. Joosten HJ, et al. Among authors: schaap pj. Proteins. 2008 Jan 1;70(1):157-66. doi: 10.1002/prot.21622. Proteins. 2008. PMID: 17654546

8

An iterative workflow for mining the human intestinal metaproteome.

Rooijers K, Kolmeder C, Juste C, Doré J, de Been M, Boeren S, Galan P, Beauvallet C, de Vos WM, Schaap PJ. Rooijers K, et al. Among authors: schaap pj. BMC Genomics. 2011 Jan 5;12:6. doi: 10.1186/1471-2164-12-6. BMC Genomics. 2011. PMID: 21208423 Free PMC article.

9

Effects of Argonaute on Gene Expression in Thermus thermophilus.

Swarts DC, Koehorst JJ, Westra ER, Schaap PJ, van der Oost J. Swarts DC, et al. Among authors: schaap pj. PLoS One. 2015 Apr 22;10(4):e0124880. doi: 10.1371/journal.pone.0124880. eCollection 2015. PLoS One. 2015. PMID: 25902012 Free PMC article.

10

Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View.

Saccenti E, Nieuwenhuijse D, Koehorst JJ, Martins dos Santos VA, Schaap PJ. Saccenti E, et al. Among authors: schaap pj. PLoS One. 2015 Sep 14;10(9):e0137908. doi: 10.1371/journal.pone.0137908. eCollection 2015. PLoS One. 2015. PMID: 26366735 Free PMC article.

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