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ECOD: an evolutionary classification of protein domains.
Cheng H, Schaeffer RD, Liao Y, Kinch LN, Pei J, Shi S, Kim BH, Grishin NV. Cheng H, et al. Among authors: schaeffer rd. PLoS Comput Biol. 2014 Dec 4;10(12):e1003926. doi: 10.1371/journal.pcbi.1003926. eCollection 2014 Dec. PLoS Comput Biol. 2014. PMID: 25474468 Free PMC article.
Manual classification strategies in the ECOD database.
Cheng H, Liao Y, Schaeffer RD, Grishin NV. Cheng H, et al. Among authors: schaeffer rd. Proteins. 2015 Jul;83(7):1238-51. doi: 10.1002/prot.24818. Epub 2015 May 8. Proteins. 2015. PMID: 25917548 Free PMC article.
CASP 11 target classification.
Kinch LN, Li W, Schaeffer RD, Dunbrack RL, Monastyrskyy B, Kryshtafovych A, Grishin NV. Kinch LN, et al. Among authors: schaeffer rd. Proteins. 2016 Sep;84 Suppl 1(Suppl 1):20-33. doi: 10.1002/prot.24982. Epub 2016 Jan 27. Proteins. 2016. PMID: 26756794 Free PMC article.
A sequence family database built on ECOD structural domains.
Liao Y, Schaeffer RD, Pei J, Grishin NV. Liao Y, et al. Among authors: schaeffer rd. Bioinformatics. 2018 Sep 1;34(17):2997-3003. doi: 10.1093/bioinformatics/bty214. Bioinformatics. 2018. PMID: 29659718 Free PMC article.
30 results