Schatz MC - Search Results

1

Assemblytics: a web analytics tool for the detection of variants from an assembly.

Nattestad M, Schatz MC. Nattestad M, et al. Among authors: schatz mc. Bioinformatics. 2016 Oct 1;32(19):3021-3. doi: 10.1093/bioinformatics/btw369. Epub 2016 Jun 17. Bioinformatics. 2016. PMID: 27318204 Free PMC article.

2

Genome assembly forensics: finding the elusive mis-assembly.

Phillippy AM, Schatz MC, Pop M. Phillippy AM, et al. Among authors: schatz mc. Genome Biol. 2008;9(3):R55. doi: 10.1186/gb-2008-9-3-r55. Epub 2008 Mar 14. Genome Biol. 2008. PMID: 18341692 Free PMC article.

3

CloudBurst: highly sensitive read mapping with MapReduce.

Schatz MC. Schatz MC. Bioinformatics. 2009 Jun 1;25(11):1363-9. doi: 10.1093/bioinformatics/btp236. Epub 2009 Apr 8. Bioinformatics. 2009. PMID: 19357099 Free PMC article.

4

Assembly complexity of prokaryotic genomes using short reads.

Kingsford C, Schatz MC, Pop M. Kingsford C, et al. Among authors: schatz mc. BMC Bioinformatics. 2010 Jan 12;11:21. doi: 10.1186/1471-2105-11-21. BMC Bioinformatics. 2010. PMID: 20064276 Free PMC article.

5

Assembly of large genomes using second-generation sequencing.

Schatz MC, Delcher AL, Salzberg SL. Schatz MC, et al. Genome Res. 2010 Sep;20(9):1165-73. doi: 10.1101/gr.101360.109. Epub 2010 May 27. Genome Res. 2010. PMID: 20508146 Free PMC article.

6

The missing graphical user interface for genomics.

Schatz MC. Schatz MC. Genome Biol. 2010;11(8):128. doi: 10.1186/gb-2010-11-8-128. Epub 2010 Aug 25. Genome Biol. 2010. PMID: 20804568 Free PMC article.

7

Quake: quality-aware detection and correction of sequencing errors.

Kelley DR, Schatz MC, Salzberg SL. Kelley DR, et al. Among authors: schatz mc. Genome Biol. 2010;11(11):R116. doi: 10.1186/gb-2010-11-11-r116. Epub 2010 Nov 29. Genome Biol. 2010. PMID: 21114842 Free PMC article.

8

GAGE: A critical evaluation of genome assemblies and assembly algorithms.

Salzberg SL, Phillippy AM, Zimin A, Puiu D, Magoc T, Koren S, Treangen TJ, Schatz MC, Delcher AL, Roberts M, Marçais G, Pop M, Yorke JA. Salzberg SL, et al. Among authors: schatz mc. Genome Res. 2012 Mar;22(3):557-67. doi: 10.1101/gr.131383.111. Epub 2012 Jan 6. Genome Res. 2012. PMID: 22147368 Free PMC article.

9

Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies.

Schatz MC, Phillippy AM, Sommer DD, Delcher AL, Puiu D, Narzisi G, Salzberg SL, Pop M. Schatz MC, et al. Brief Bioinform. 2013 Mar;14(2):213-24. doi: 10.1093/bib/bbr074. Epub 2011 Dec 23. Brief Bioinform. 2013. PMID: 22199379 Free PMC article.

10

Current challenges in de novo plant genome sequencing and assembly.

Schatz MC, Witkowski J, McCombie WR. Schatz MC, et al. Genome Biol. 2012;13(4):243. doi: 10.1186/gb4015. Genome Biol. 2012. PMID: 22546054 Free PMC article. Review.

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