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Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: a novel context analysis approach.
Scherf M, Klingenhoff A, Werner T. Scherf M, et al. J Mol Biol. 2000 Mar 31;297(3):599-606. doi: 10.1006/jmbi.2000.3589. J Mol Biol. 2000. PMID: 10731414
First pass annotation of promoters on human chromosome 22.
Scherf M, Klingenhoff A, Frech K, Quandt K, Schneider R, Grote K, Frisch M, Gailus-Durner V, Seidel A, Brack-Werner R, Werner T. Scherf M, et al. Genome Res. 2001 Mar;11(3):333-40. doi: 10.1101/gr.154601. Genome Res. 2001. PMID: 11230158 Free PMC article.
Experimental data of a single promoter can be used for in silico detection of genes with related regulation in the absence of sequence similarity.
Gailus-Durner V, Scherf M, Werner T. Gailus-Durner V, et al. Among authors: scherf m. Mamm Genome. 2001 Jan;12(1):67-72. doi: 10.1007/s003350010219. Mamm Genome. 2001. PMID: 11178746
Situation assessment of glaucoma using a hybrid fuzzy neural network.
Zahlmann G, Scherf M, Wegner A, Obermaier M, Mertz M. Zahlmann G, et al. Among authors: scherf m. IEEE Eng Med Biol Mag. 2000 Jan-Feb;19(1):84-91. doi: 10.1109/51.816247. IEEE Eng Med Biol Mag. 2000. PMID: 10659433 No abstract available.
Tissue-specific transcript annotation and expression profiling with complementary next-generation sequencing technologies.
Hestand MS, Klingenhoff A, Scherf M, Ariyurek Y, Ramos Y, van Workum W, Suzuki M, Werner T, van Ommen GJ, den Dunnen JT, Harbers M, 't Hoen PA. Hestand MS, et al. Among authors: scherf m. Nucleic Acids Res. 2010 Sep;38(16):e165. doi: 10.1093/nar/gkq602. Epub 2010 Jul 7. Nucleic Acids Res. 2010. PMID: 20615900 Free PMC article.
Diagnosis of human oligodendrogliomas with the help of the NeuroShell Easy Classifier neural network.
Iglesias J, Esparza J, Scherf M. Iglesias J, et al. Among authors: scherf m. Anal Quant Cytol Histol. 2000 Oct;22(5):383-92. Anal Quant Cytol Histol. 2000. PMID: 11064814
Nitric oxide-responsive genes and promoters in Arabidopsis thaliana: a bioinformatics approach.
Palmieri MC, Sell S, Huang X, Scherf M, Werner T, Durner J, Lindermayr C. Palmieri MC, et al. Among authors: scherf m. J Exp Bot. 2008;59(2):177-86. doi: 10.1093/jxb/erm345. Epub 2008 Feb 13. J Exp Bot. 2008. PMID: 18272923
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome.
Sultan M, Schulz MH, Richard H, Magen A, Klingenhoff A, Scherf M, Seifert M, Borodina T, Soldatov A, Parkhomchuk D, Schmidt D, O'Keeffe S, Haas S, Vingron M, Lehrach H, Yaspo ML. Sultan M, et al. Among authors: scherf m. Science. 2008 Aug 15;321(5891):956-60. doi: 10.1126/science.1160342. Epub 2008 Jul 3. Science. 2008. PMID: 18599741
Detecting and visualizing gene fusions.
Supper J, Gugenmus C, Wollnik J, Drueke T, Scherf M, Hahn A, Grote K, Bretschneider N, Klocke B, Zinser C, Cartharius K, Seifert M. Supper J, et al. Among authors: scherf m. Methods. 2013 Jan;59(1):S24-8. doi: 10.1016/j.ymeth.2012.09.013. Epub 2012 Oct 2. Methods. 2013. PMID: 23036331
Multievidence microarray mining.
Seifert M, Scherf M, Epple A, Werner T. Seifert M, et al. Among authors: scherf m. Trends Genet. 2005 Oct;21(10):553-8. doi: 10.1016/j.tig.2005.07.011. Trends Genet. 2005. PMID: 16098629
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