Schloss PD - Search Results

1

De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units.

Westcott SL, Schloss PD. Westcott SL, et al. Among authors: schloss pd. PeerJ. 2015 Dec 8;3:e1487. doi: 10.7717/peerj.1487. eCollection 2015. PeerJ. 2015. PMID: 26664811 Free PMC article.

2

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.

Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF. Schloss PD, et al. Appl Environ Microbiol. 2009 Dec;75(23):7537-41. doi: 10.1128/AEM.01541-09. Epub 2009 Oct 2. Appl Environ Microbiol. 2009. PMID: 19801464 Free PMC article.

3

The effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA gene-based studies.

Schloss PD. Schloss PD. PLoS Comput Biol. 2010 Jul 8;6(7):e1000844. doi: 10.1371/journal.pcbi.1000844. PLoS Comput Biol. 2010. PMID: 20628621 Free PMC article.

4

Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis.

Schloss PD, Westcott SL. Schloss PD, et al. Appl Environ Microbiol. 2011 May;77(10):3219-26. doi: 10.1128/AEM.02810-10. Epub 2011 Mar 18. Appl Environ Microbiol. 2011. PMID: 21421784 Free PMC article.

5

Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies.

Schloss PD, Gevers D, Westcott SL. Schloss PD, et al. PLoS One. 2011;6(12):e27310. doi: 10.1371/journal.pone.0027310. Epub 2011 Dec 14. PLoS One. 2011. PMID: 22194782 Free PMC article.

6

Decade-long bacterial community dynamics in cystic fibrosis airways.

Zhao J, Schloss PD, Kalikin LM, Carmody LA, Foster BK, Petrosino JF, Cavalcoli JD, VanDevanter DR, Murray S, Li JZ, Young VB, LiPuma JJ. Zhao J, et al. Among authors: schloss pd. Proc Natl Acad Sci U S A. 2012 Apr 10;109(15):5809-14. doi: 10.1073/pnas.1120577109. Epub 2012 Mar 26. Proc Natl Acad Sci U S A. 2012. PMID: 22451929 Free PMC article.

7

Stabilization of the murine gut microbiome following weaning.

Schloss PD, Schubert AM, Zackular JP, Iverson KD, Young VB, Petrosino JF. Schloss PD, et al. Gut Microbes. 2012 Jul-Aug;3(4):383-93. doi: 10.4161/gmic.21008. Epub 2012 Jun 12. Gut Microbes. 2012. PMID: 22688727 Free PMC article.

8

Secondary structure improves OTU assignments of 16S rRNA gene sequences.

Schloss PD. Schloss PD. ISME J. 2013 Mar;7(3):457-60. doi: 10.1038/ismej.2012.102. Epub 2012 Sep 27. ISME J. 2013. PMID: 23018771 Free PMC article. No abstract available.

9

Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.

Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD. Kozich JJ, et al. Among authors: schloss pd. Appl Environ Microbiol. 2013 Sep;79(17):5112-20. doi: 10.1128/AEM.01043-13. Epub 2013 Jun 21. Appl Environ Microbiol. 2013. PMID: 23793624 Free PMC article.

10

The gut microbiome modulates colon tumorigenesis.

Zackular JP, Baxter NT, Iverson KD, Sadler WD, Petrosino JF, Chen GY, Schloss PD. Zackular JP, et al. Among authors: schloss pd. mBio. 2013 Nov 5;4(6):e00692-13. doi: 10.1128/mBio.00692-13. mBio. 2013. PMID: 24194538 Free PMC article.

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