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27 results
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GUNC: detection of chimerism and contamination in prokaryotic genomes.
Orakov A, Fullam A, Coelho LP, Khedkar S, Szklarczyk D, Mende DR, Schmidt TSB, Bork P. Orakov A, et al. Among authors: schmidt tsb. Genome Biol. 2021 Jun 13;22(1):178. doi: 10.1186/s13059-021-02393-0. Genome Biol. 2021. PMID: 34120611 Free PMC article.
proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes.
Mende DR, Letunic I, Maistrenko OM, Schmidt TSB, Milanese A, Paoli L, Hernández-Plaza A, Orakov AN, Forslund SK, Sunagawa S, Zeller G, Huerta-Cepas J, Coelho LP, Bork P. Mende DR, et al. Among authors: schmidt tsb. Nucleic Acids Res. 2020 Jan 8;48(D1):D621-D625. doi: 10.1093/nar/gkz1002. Nucleic Acids Res. 2020. PMID: 31647096 Free PMC article.
Microbial abundance, activity and population genomic profiling with mOTUs2.
Milanese A, Mende DR, Paoli L, Salazar G, Ruscheweyh HJ, Cuenca M, Hingamp P, Alves R, Costea PI, Coelho LP, Schmidt TSB, Almeida A, Mitchell AL, Finn RD, Huerta-Cepas J, Bork P, Zeller G, Sunagawa S. Milanese A, et al. Among authors: schmidt tsb. Nat Commun. 2019 Mar 4;10(1):1014. doi: 10.1038/s41467-019-08844-4. Nat Commun. 2019. PMID: 30833550 Free PMC article.
Effects of oral antibiotics and isotretinoin on the murine gut microbiota.
Becker E, Schmidt TSB, Bengs S, Poveda L, Opitz L, Atrott K, Stanzel C, Biedermann L, Rehman A, Jonas D, von Mering C, Rogler G, Frey-Wagner I. Becker E, et al. Among authors: schmidt tsb. Int J Antimicrob Agents. 2017 Sep;50(3):342-351. doi: 10.1016/j.ijantimicag.2017.03.017. Epub 2017 Jul 6. Int J Antimicrob Agents. 2017. PMID: 28689869
27 results