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Combining de novo and reference-guided assembly with scaffold_builder.
Silva GG, Dutilh BE, Matthews TD, Elkins K, Schmieder R, Dinsdale EA, Edwards RA. Silva GG, et al. Among authors: schmieder r. Source Code Biol Med. 2013 Nov 22;8(1):23. doi: 10.1186/1751-0473-8-23. Source Code Biol Med. 2013. PMID: 24267787 Free PMC article.
Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions.
Dutilh BE, Thompson CC, Vicente AC, Marin MA, Lee C, Silva GG, Schmieder R, Andrade BG, Chimetto L, Cuevas D, Garza DR, Okeke IN, Aboderin AO, Spangler J, Ross T, Dinsdale EA, Thompson FL, Harkins TT, Edwards RA. Dutilh BE, et al. Among authors: schmieder r. BMC Genomics. 2014 Aug 5;15(1):654. doi: 10.1186/1471-2164-15-654. BMC Genomics. 2014. PMID: 25096633 Free PMC article.
Reference-independent comparative metagenomics using cross-assembly: crAss.
Dutilh BE, Schmieder R, Nulton J, Felts B, Salamon P, Edwards RA, Mokili JL. Dutilh BE, et al. Among authors: schmieder r. Bioinformatics. 2012 Dec 15;28(24):3225-31. doi: 10.1093/bioinformatics/bts613. Epub 2012 Oct 16. Bioinformatics. 2012. PMID: 23074261 Free PMC article.
804 results