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New primers for promising single-copy genes in fungal phylogenetics and systematics.
Schmitt I, Crespo A, Divakar PK, Fankhauser JD, Herman-Sackett E, Kalb K, Nelsen MP, Nelson NA, Rivas-Plata E, Shimp AD, Widhelm T, Lumbsch HT. Schmitt I, et al. Persoonia. 2009 Dec;23:35-40. doi: 10.3767/003158509X470602. Epub 2009 Aug 4. Persoonia. 2009. PMID: 20198159 Free PMC article.
Reconstructing the early evolution of Fungi using a six-gene phylogeny.
James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, Cox CJ, Celio G, Gueidan C, Fraker E, Miadlikowska J, Lumbsch HT, Rauhut A, Reeb V, Arnold AE, Amtoft A, Stajich JE, Hosaka K, Sung GH, Johnson D, O'Rourke B, Crockett M, Binder M, Curtis JM, Slot JC, Wang Z, Wilson AW, Schüssler A, Longcore JE, O'Donnell K, Mozley-Standridge S, Porter D, Letcher PM, Powell MJ, Taylor JW, White MM, Griffith GW, Davies DR, Humber RA, Morton JB, Sugiyama J, Rossman AY, Rogers JD, Pfister DH, Hewitt D, Hansen K, Hambleton S, Shoemaker RA, Kohlmeyer J, Volkmann-Kohlmeyer B, Spotts RA, Serdani M, Crous PW, Hughes KW, Matsuura K, Langer E, Langer G, Untereiner WA, Lücking R, Büdel B, Geiser DM, Aptroot A, Diederich P, Schmitt I, Schultz M, Yahr R, Hibbett DS, Lutzoni F, McLaughlin DJ, Spatafora JW, Vilgalys R. James TY, et al. Nature. 2006 Oct 19;443(7113):818-22. doi: 10.1038/nature05110. Nature. 2006. PMID: 17051209
Evolution of host resistance in a toxin-producing bacterial-fungal alliance.
Schmitt I, Partida-Martinez LP, Winkler R, Voigt K, Einax E, Dölz F, Telle S, Wöstemeyer J, Hertweck C. Schmitt I, et al. ISME J. 2008 Jun;2(6):632-41. doi: 10.1038/ismej.2008.19. Epub 2008 Feb 28. ISME J. 2008. PMID: 18309361
Phylogenetic methods in natural product research.
Schmitt I, Barker FK. Schmitt I, et al. Nat Prod Rep. 2009 Dec;26(12):1585-602. doi: 10.1039/b910458p. Epub 2009 Oct 13. Nat Prod Rep. 2009. PMID: 19936388 Review.
Coalescent-based species delimitation approach uncovers high cryptic diversity in the cosmopolitan lichen-forming fungal genus Protoparmelia (Lecanorales, Ascomycota).
Singh G, Dal Grande F, Divakar PK, Otte J, Leavitt SD, Szczepanska K, Crespo A, Rico VJ, Aptroot A, Cáceres ME, Lumbsch HT, Schmitt I. Singh G, et al. PLoS One. 2015 May 1;10(5):e0124625. doi: 10.1371/journal.pone.0124625. eCollection 2015. PLoS One. 2015. PMID: 25932996 Free PMC article.
Whole-Genome Sequence Data Uncover Widespread Heterothallism in the Largest Group of Lichen-Forming Fungi.
Pizarro D, Dal Grande F, Leavitt SD, Dyer PS, Schmitt I, Crespo A, Thorsten Lumbsch H, Divakar PK. Pizarro D, et al. Genome Biol Evol. 2019 Mar 1;11(3):721-730. doi: 10.1093/gbe/evz027. Genome Biol Evol. 2019. PMID: 30715356 Free PMC article.
Evolution of complex symbiotic relationships in a morphologically derived family of lichen-forming fungi.
Divakar PK, Crespo A, Wedin M, Leavitt SD, Hawksworth DL, Myllys L, McCune B, Randlane T, Bjerke JW, Ohmura Y, Schmitt I, Boluda CG, Alors D, Roca-Valiente B, Del-Prado R, Ruibal C, Buaruang K, Núñez-Zapata J, Amo de Paz G, Rico VJ, Molina MC, Elix JA, Esslinger TL, Tronstad IK, Lindgren H, Ertz D, Gueidan C, Saag L, Mark K, Singh G, Dal Grande F, Parnmen S, Beck A, Benatti MN, Blanchon D, Candan M, Clerc P, Goward T, Grube M, Hodkinson BP, Hur JS, Kantvilas G, Kirika PM, Lendemer J, Mattsson JE, Messuti MI, Miadlikowska J, Nelsen M, Ohlson JI, Pérez-Ortega S, Saag A, Sipman HJ, Sohrabi M, Thell A, Thor G, Truong C, Yahr R, Upreti DK, Cubas P, Lumbsch HT. Divakar PK, et al. New Phytol. 2015 Dec;208(4):1217-26. doi: 10.1111/nph.13553. Epub 2015 Aug 24. New Phytol. 2015. PMID: 26299211
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