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85 results
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Sub-angstrom modeling of complexes between flexible peptides and globular proteins.
Raveh B, London N, Schueler-Furman O. Raveh B, et al. Proteins. 2010 Jul;78(9):2029-40. doi: 10.1002/prot.22716. Proteins. 2010. PMID: 20455260
Knowledge-based structure prediction of MHC class I bound peptides: a study of 23 complexes.
Schueler-Furman O, Elber R, Margalit H. Schueler-Furman O, et al. Fold Des. 1998;3(6):549-64. doi: 10.1016/S1359-0278(98)00070-4. Fold Des. 1998. PMID: 9889166
Structure-based prediction of binding peptides to MHC class I molecules: application to a broad range of MHC alleles.
Schueler-Furman O, Altuvia Y, Sette A, Margalit H. Schueler-Furman O, et al. Protein Sci. 2000 Sep;9(9):1838-46. doi: 10.1110/ps.9.9.1838. Protein Sci. 2000. PMID: 11045629 Free PMC article.
Examination of possible structural constraints of MHC-binding peptides by assessment of their native structure within their source proteins.
Schueler-Furman O, Altuvia Y, Margalit H. Schueler-Furman O, et al. Proteins. 2001 Oct 1;45(1):47-54. doi: 10.1002/prot.1122. Proteins. 2001. PMID: 11536359
Protein-protein docking predictions for the CAPRI experiment.
Gray JJ, Moughon SE, Kortemme T, Schueler-Furman O, Misura KM, Morozov AV, Baker D. Gray JJ, et al. Proteins. 2003 Jul 1;52(1):118-22. doi: 10.1002/prot.10384. Proteins. 2003. PMID: 12784377
Rosetta predictions in CASP5: successes, failures, and prospects for complete automation.
Bradley P, Chivian D, Meiler J, Misura KM, Rohl CA, Schief WR, Wedemeyer WJ, Schueler-Furman O, Murphy P, Schonbrun J, Strauss CE, Baker D. Bradley P, et al. Proteins. 2003;53 Suppl 6:457-68. doi: 10.1002/prot.10552. Proteins. 2003. PMID: 14579334
Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.
Schueler-Furman O, Wang C, Baker D. Schueler-Furman O, et al. Proteins. 2005 Aug 1;60(2):187-94. doi: 10.1002/prot.20556. Proteins. 2005. PMID: 15981249
RosettaDock in CAPRI rounds 6-12.
Wang C, Schueler-Furman O, Andre I, London N, Fleishman SJ, Bradley P, Qian B, Baker D. Wang C, et al. Proteins. 2007 Dec 1;69(4):758-63. doi: 10.1002/prot.21684. Proteins. 2007. PMID: 17671979
Assessing the energy landscape of CAPRI targets by FunHunt.
London N, Schueler-Furman O. London N, et al. Proteins. 2007 Dec 1;69(4):809-15. doi: 10.1002/prot.21736. Proteins. 2007. PMID: 17803233
Funnel hunting in a rough terrain: learning and discriminating native energy funnels.
London N, Schueler-Furman O. London N, et al. Structure. 2008 Feb;16(2):269-79. doi: 10.1016/j.str.2007.11.013. Structure. 2008. PMID: 18275818
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