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A network of protein-protein interactions in yeast.
Schwikowski B, Uetz P, Fields S. Schwikowski B, et al. Nat Biotechnol. 2000 Dec;18(12):1257-61. doi: 10.1038/82360. Nat Biotechnol. 2000. PMID: 11101803
Signal maps for mass spectrometry-based comparative proteomics.
Prakash A, Mallick P, Whiteaker J, Zhang H, Paulovich A, Flory M, Lee H, Aebersold R, Schwikowski B. Prakash A, et al. Among authors: schwikowski b. Mol Cell Proteomics. 2006 Mar;5(3):423-32. doi: 10.1074/mcp.M500133-MCP200. Epub 2005 Nov 3. Mol Cell Proteomics. 2006. PMID: 16269421
ProbIDtree: an automated software program capable of identifying multiple peptides from a single collision-induced dissociation spectrum collected by a tandem mass spectrometer.
Zhang N, Li XJ, Ye M, Pan S, Schwikowski B, Aebersold R. Zhang N, et al. Among authors: schwikowski b. Proteomics. 2005 Nov;5(16):4096-106. doi: 10.1002/pmic.200401260. Proteomics. 2005. PMID: 16196091
Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism.
Buescher JM, Liebermeister W, Jules M, Uhr M, Muntel J, Botella E, Hessling B, Kleijn RJ, Le Chat L, Lecointe F, Mäder U, Nicolas P, Piersma S, Rügheimer F, Becher D, Bessieres P, Bidnenko E, Denham EL, Dervyn E, Devine KM, Doherty G, Drulhe S, Felicori L, Fogg MJ, Goelzer A, Hansen A, Harwood CR, Hecker M, Hubner S, Hultschig C, Jarmer H, Klipp E, Leduc A, Lewis P, Molina F, Noirot P, Peres S, Pigeonneau N, Pohl S, Rasmussen S, Rinn B, Schaffer M, Schnidder J, Schwikowski B, Van Dijl JM, Veiga P, Walsh S, Wilkinson AJ, Stelling J, Aymerich S, Sauer U. Buescher JM, et al. Among authors: schwikowski b. Science. 2012 Mar 2;335(6072):1099-103. doi: 10.1126/science.1206871. Science. 2012. PMID: 22383848
Evolution of metabolic network organization.
Mazurie A, Bonchev D, Schwikowski B, Buck GA. Mazurie A, et al. Among authors: schwikowski b. BMC Syst Biol. 2010 May 11;4:59. doi: 10.1186/1752-0509-4-59. BMC Syst Biol. 2010. PMID: 20459825 Free PMC article.
GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring.
Garcia O, Saveanu C, Cline M, Fromont-Racine M, Jacquier A, Schwikowski B, Aittokallio T. Garcia O, et al. Among authors: schwikowski b. Bioinformatics. 2007 Feb 1;23(3):394-6. doi: 10.1093/bioinformatics/btl605. Epub 2006 Nov 24. Bioinformatics. 2007. PMID: 17127678
Tools enabling the elucidation of molecular pathways active in human disease: application to Hepatitis C virus infection.
Reiss DJ, Avila-Campillo I, Thorsson V, Schwikowski B, Galitski T. Reiss DJ, et al. Among authors: schwikowski b. BMC Bioinformatics. 2005 Jun 20;6:154. doi: 10.1186/1471-2105-6-154. BMC Bioinformatics. 2005. PMID: 15967031 Free PMC article.
Predicting protein-peptide interactions via a network-based motif sampler.
Reiss DJ, Schwikowski B. Reiss DJ, et al. Among authors: schwikowski b. Bioinformatics. 2004 Aug 4;20 Suppl 1:i274-82. doi: 10.1093/bioinformatics/bth922. Bioinformatics. 2004. PMID: 15262809
Discovering regulatory and signalling circuits in molecular interaction networks.
Ideker T, Ozier O, Schwikowski B, Siegel AF. Ideker T, et al. Among authors: schwikowski b. Bioinformatics. 2002;18 Suppl 1:S233-40. doi: 10.1093/bioinformatics/18.suppl_1.s233. Bioinformatics. 2002. PMID: 12169552
Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. Shannon P, et al. Among authors: schwikowski b. Genome Res. 2003 Nov;13(11):2498-504. doi: 10.1101/gr.1239303. Genome Res. 2003. PMID: 14597658 Free PMC article.
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