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Prokka: rapid prokaryotic genome annotation.
Seemann T. Seemann T. Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18. Bioinformatics. 2014. PMID: 24642063
Genomic investigation of Staphylococcus aureus recovered from Gambian women and newborns following an oral dose of intra-partum azithromycin.
Bojang A, Baines SL, Donovan L, Guerillot R, Stevens K, Higgs C, Bottomley C, Secka O, Schultz MB, Gonçalves da Silva A, Seemann T, Stinear TP, Roca A, Howden BP. Bojang A, et al. J Antimicrob Chemother. 2019 Nov 1;74(11):3170-3178. doi: 10.1093/jac/dkz341. J Antimicrob Chemother. 2019. PMID: 31424550 Free PMC article.
Mining the Methylome Reveals Extensive Diversity in Staphylococcus epidermidis Restriction Modification.
Lee JYH, Carter GP, Pidot SJ, Guérillot R, Seemann T, Gonçalves da Silva A, Foster TJ, Howden BP, Stinear TP, Monk IR. Lee JYH, et al. Among authors: seemann t. mBio. 2019 Dec 17;10(6):e02451-19. doi: 10.1128/mBio.02451-19. mBio. 2019. PMID: 31848274 Free PMC article.
Genome reduction in Leptospira borgpetersenii reflects limited transmission potential.
Bulach DM, Zuerner RL, Wilson P, Seemann T, McGrath A, Cullen PA, Davis J, Johnson M, Kuczek E, Alt DP, Peterson-Burch B, Coppel RL, Rood JI, Davies JK, Adler B. Bulach DM, et al. Proc Natl Acad Sci U S A. 2006 Sep 26;103(39):14560-5. doi: 10.1073/pnas.0603979103. Epub 2006 Sep 14. Proc Natl Acad Sci U S A. 2006. PMID: 16973745 Free PMC article.
Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis.
Stinear TP, Seemann T, Harrison PF, Jenkin GA, Davies JK, Johnson PD, Abdellah Z, Arrowsmith C, Chillingworth T, Churcher C, Clarke K, Cronin A, Davis P, Goodhead I, Holroyd N, Jagels K, Lord A, Moule S, Mungall K, Norbertczak H, Quail MA, Rabbinowitsch E, Walker D, White B, Whitehead S, Small PL, Brosch R, Ramakrishnan L, Fischbach MA, Parkhill J, Cole ST. Stinear TP, et al. Genome Res. 2008 May;18(5):729-41. doi: 10.1101/gr.075069.107. Epub 2008 Apr 10. Genome Res. 2008. PMID: 18403782 Free PMC article.
Resequencing the Mycobacterium avium subsp. paratuberculosis K10 genome: improved annotation and revised genome sequence.
Wynne JW, Seemann T, Bulach DM, Coutts SA, Talaat AM, Michalski WP. Wynne JW, et al. J Bacteriol. 2010 Dec;192(23):6319-20. doi: 10.1128/JB.00972-10. Epub 2010 Sep 24. J Bacteriol. 2010. PMID: 20870759 Free PMC article.
Serological evaluation of Mycobacterium ulcerans antigens identified by comparative genomics.
Pidot SJ, Porter JL, Marsollier L, Chauty A, Migot-Nabias F, Badaut C, Bénard A, Ruf MT, Seemann T, Johnson PD, Davies JK, Jenkin GA, Pluschke G, Stinear TP. Pidot SJ, et al. PLoS Negl Trop Dis. 2010 Nov 2;4(11):e872. doi: 10.1371/journal.pntd.0000872. PLoS Negl Trop Dis. 2010. PMID: 21072233 Free PMC article.
The dominant Australian community-acquired methicillin-resistant Staphylococcus aureus clone ST93-IV [2B] is highly virulent and genetically distinct.
Chua KY, Seemann T, Harrison PF, Monagle S, Korman TM, Johnson PD, Coombs GW, Howden BO, Davies JK, Howden BP, Stinear TP. Chua KY, et al. PLoS One. 2011;6(10):e25887. doi: 10.1371/journal.pone.0025887. Epub 2011 Oct 3. PLoS One. 2011. PMID: 21991381 Free PMC article.
Pathogenomics of Pasteurella multocida.
Boyce JD, Seemann T, Adler B, Harper M. Boyce JD, et al. Curr Top Microbiol Immunol. 2012;361:23-38. doi: 10.1007/82_2012_203. Curr Top Microbiol Immunol. 2012. PMID: 22402726 Review.
VAGUE: a graphical user interface for the Velvet assembler.
Powell DR, Seemann T. Powell DR, et al. Bioinformatics. 2013 Jan 15;29(2):264-5. doi: 10.1093/bioinformatics/bts664. Epub 2012 Nov 17. Bioinformatics. 2013. PMID: 23162059
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