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Emerging whole-cell modeling principles and methods.
Goldberg AP, Szigeti B, Chew YH, Sekar JA, Roth YD, Karr JR. Goldberg AP, et al. Among authors: sekar ja. Curr Opin Biotechnol. 2018 Jun;51:97-102. doi: 10.1016/j.copbio.2017.12.013. Epub 2017 Dec 21. Curr Opin Biotechnol. 2018. PMID: 29275251 Free PMC article. Review.
A blueprint for human whole-cell modeling.
Szigeti B, Roth YD, Sekar JAP, Goldberg AP, Pochiraju SC, Karr JR. Szigeti B, et al. Among authors: sekar jap. Curr Opin Syst Biol. 2018 Feb;7:8-15. doi: 10.1016/j.coisb.2017.10.005. Epub 2017 Nov 9. Curr Opin Syst Biol. 2018. PMID: 29806041 Free PMC article.
Automated visualization of rule-based models.
Sekar JAP, Tapia JJ, Faeder JR. Sekar JAP, et al. PLoS Comput Biol. 2017 Nov 13;13(11):e1005857. doi: 10.1371/journal.pcbi.1005857. eCollection 2017 Nov. PLoS Comput Biol. 2017. PMID: 29131816 Free PMC article.
BioNetGen 2.2: advances in rule-based modeling.
Harris LA, Hogg JS, Tapia JJ, Sekar JA, Gupta S, Korsunsky I, Arora A, Barua D, Sheehan RP, Faeder JR. Harris LA, et al. Among authors: sekar ja. Bioinformatics. 2016 Nov 1;32(21):3366-3368. doi: 10.1093/bioinformatics/btw469. Epub 2016 Jul 8. Bioinformatics. 2016. PMID: 27402907 Free PMC article.