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426 results
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Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Dixon JR, Selvaraj S, Yue F, Kim A, Li Y, Shen Y, Hu M, Liu JS, Ren B. Dixon JR, et al. Among authors: selvaraj s. Nature. 2012 Apr 11;485(7398):376-80. doi: 10.1038/nature11082. Nature. 2012. PMID: 22495300 Free PMC article.
A high-resolution map of the three-dimensional chromatin interactome in human cells.
Jin F, Li Y, Dixon JR, Selvaraj S, Ye Z, Lee AY, Yen CA, Schmitt AD, Espinoza CA, Ren B. Jin F, et al. Among authors: selvaraj s. Nature. 2013 Nov 14;503(7475):290-4. doi: 10.1038/nature12644. Epub 2013 Oct 20. Nature. 2013. PMID: 24141950 Free PMC article.
Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing.
Selvaraj S, R Dixon J, Bansal V, Ren B. Selvaraj S, et al. Nat Biotechnol. 2013 Dec;31(12):1111-8. doi: 10.1038/nbt.2728. Epub 2013 Nov 3. Nat Biotechnol. 2013. PMID: 24185094 Free PMC article.
5mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation.
Hon GC, Song CX, Du T, Jin F, Selvaraj S, Lee AY, Yen CA, Ye Z, Mao SQ, Wang BA, Kuan S, Edsall LE, Zhao BS, Xu GL, He C, Ren B. Hon GC, et al. Among authors: selvaraj s. Mol Cell. 2014 Oct 23;56(2):286-297. doi: 10.1016/j.molcel.2014.08.026. Epub 2014 Sep 25. Mol Cell. 2014. PMID: 25263596 Free PMC article.
CRISPR reveals a distal super-enhancer required for Sox2 expression in mouse embryonic stem cells.
Li Y, Rivera CM, Ishii H, Jin F, Selvaraj S, Lee AY, Dixon JR, Ren B. Li Y, et al. Among authors: selvaraj s. PLoS One. 2014 Dec 8;9(12):e114485. doi: 10.1371/journal.pone.0114485. eCollection 2014. PLoS One. 2014. PMID: 25486255 Free PMC article.
Chromatin architecture reorganization during stem cell differentiation.
Dixon JR, Jung I, Selvaraj S, Shen Y, Antosiewicz-Bourget JE, Lee AY, Ye Z, Kim A, Rajagopal N, Xie W, Diao Y, Liang J, Zhao H, Lobanenkov VV, Ecker JR, Thomson JA, Ren B. Dixon JR, et al. Among authors: selvaraj s. Nature. 2015 Feb 19;518(7539):331-6. doi: 10.1038/nature14222. Nature. 2015. PMID: 25693564 Free PMC article.
Integrative analysis of haplotype-resolved epigenomes across human tissues.
Leung D, Jung I, Rajagopal N, Schmitt A, Selvaraj S, Lee AY, Yen CA, Lin S, Lin Y, Qiu Y, Xie W, Yue F, Hariharan M, Ray P, Kuan S, Edsall L, Yang H, Chi NC, Zhang MQ, Ecker JR, Ren B. Leung D, et al. Among authors: selvaraj s. Nature. 2015 Feb 19;518(7539):350-354. doi: 10.1038/nature14217. Nature. 2015. PMID: 25693566 Free PMC article.
Human body epigenome maps reveal noncanonical DNA methylation variation.
Schultz MD, He Y, Whitaker JW, Hariharan M, Mukamel EA, Leung D, Rajagopal N, Nery JR, Urich MA, Chen H, Lin S, Lin Y, Jung I, Schmitt AD, Selvaraj S, Ren B, Sejnowski TJ, Wang W, Ecker JR. Schultz MD, et al. Among authors: selvaraj s. Nature. 2015 Jul 9;523(7559):212-6. doi: 10.1038/nature14465. Epub 2015 Jun 1. Nature. 2015. PMID: 26030523 Free PMC article.
Subtle changes in chromatin loop contact propensity are associated with differential gene regulation and expression.
Greenwald WW, Li H, Benaglio P, Jakubosky D, Matsui H, Schmitt A, Selvaraj S, D'Antonio M, D'Antonio-Chronowska A, Smith EN, Frazer KA. Greenwald WW, et al. Among authors: selvaraj s. Nat Commun. 2019 Mar 5;10(1):1054. doi: 10.1038/s41467-019-08940-5. Nat Commun. 2019. PMID: 30837461 Free PMC article.
Complete haplotype phasing of the MHC and KIR loci with targeted HaploSeq.
Selvaraj S, Schmitt AD, Dixon JR, Ren B. Selvaraj S, et al. BMC Genomics. 2015 Nov 5;16:900. doi: 10.1186/s12864-015-1949-7. BMC Genomics. 2015. PMID: 26541200 Free PMC article.
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