Senol Cali D - Search Results

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Nanopore sequencing technology and tools for genome assembly: computational analysis of the current state, bottlenecks and future directions.

Senol Cali D, Kim JS, Ghose S, Alkan C, Mutlu O. Senol Cali D, et al. Brief Bioinform. 2019 Jul 19;20(4):1542-1559. doi: 10.1093/bib/bby017. Brief Bioinform. 2019. PMID: 29617724 Free PMC article. Review.

GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies.

Kim JS, Senol Cali D, Xin H, Lee D, Ghose S, Alser M, Hassan H, Ergin O, Alkan C, Mutlu O. Kim JS, et al. Among authors: senol cali d. BMC Genomics. 2018 May 9;19(Suppl 2):89. doi: 10.1186/s12864-018-4460-0. BMC Genomics. 2018. PMID: 29764378 Free PMC article.

Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm.

Firtina C, Kim JS, Alser M, Senol Cali D, Cicek AE, Alkan C, Mutlu O. Firtina C, et al. Among authors: senol cali d. Bioinformatics. 2020 Jun 1;36(12):3669-3679. doi: 10.1093/bioinformatics/btaa179. Bioinformatics. 2020. PMID: 32167530

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