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Fully automated genome analysis that reflects user needs and preferences. A detailed introduction to the MAGPIE system architecture.
Gaasterland T, Sensen CW. Gaasterland T, et al. Among authors: sensen cw. Biochimie. 1996;78(5):302-10. doi: 10.1016/0300-9084(96)84761-4. Biochimie. 1996. PMID: 8905148
MAGPIE: automated genome interpretation.
Gaasterland T, Sensen CW. Gaasterland T, et al. Among authors: sensen cw. Trends Genet. 1996 Feb;12(2):76-8. doi: 10.1016/0168-9525(96)81406-5. Trends Genet. 1996. PMID: 8851977 No abstract available.
MAGPIE/EGRET annotation of the 2.9-Mb Drosophila melanogaster Adh region.
Gaasterland T, Sczyrba A, Thomas E, Aytekin-Kurban G, Gordon P, Sensen CW. Gaasterland T, et al. Among authors: sensen cw. Genome Res. 2000 Apr;10(4):502-10. doi: 10.1101/gr.10.4.502. Genome Res. 2000. PMID: 10779489 Free PMC article.
Presence of prokaryotic and eukaryotic species in all subgroups of the PP(i)-dependent group II phosphofructokinase protein family.
Müller M, Lee JA, Gordon P, Gaasterland T, Sensen CW. Müller M, et al. Among authors: sensen cw. J Bacteriol. 2001 Nov;183(22):6714-6. doi: 10.1128/JB.183.22.6714-6716.2001. J Bacteriol. 2001. PMID: 11673446 Free PMC article.
Gene content and organization of a 281-kbp contig from the genome of the extremely thermophilic archaeon, Sulfolobus solfataricus P2.
Charlebois RL, Singh RK, Chan-Weiher CC, Allard G, Chow C, Confalonieri F, Curtis B, Duguet M, Erauso G, Faguy D, Gaasterland T, Garrett RA, Gordon P, Jeffries AC, Kozera C, Kushwaha N, Lafleur E, Medina N, Peng X, Penny SL, She Q, St Jean A, van der Oost J, Young F, Zivanovic Y, Doolittle WF, Ragan MA, Sensen CW. Charlebois RL, et al. Among authors: sensen cw. Genome. 2000 Feb;43(1):116-36. doi: 10.1139/g99-108. Genome. 2000. PMID: 10701121
Bioinformatics visualization and integration with open standards: the Bluejay genomic browser.
Turinsky AL, Ah-Seng AC, Gordon PM, Stromer JN, Taschuk ML, Xu EW, Sensen CW. Turinsky AL, et al. Among authors: sensen cw. In Silico Biol. 2005;5(2):187-98. In Silico Biol. 2005. PMID: 15972014
4D bioinformatics: a new look at the ribosome as an example.
Quon GT, Gordon P, Sensen CW. Quon GT, et al. Among authors: sensen cw. IUBMB Life. 2003 Apr-May;55(4-5):279-83. doi: 10.1080/1521654031000136255. IUBMB Life. 2003. PMID: 12880210
The Sulfolobus solfataricus P2 genome project.
Charlebois RL, Gaasterland T, Ragan MA, Doolittle WF, Sensen CW. Charlebois RL, et al. Among authors: sensen cw. FEBS Lett. 1996 Jun 24;389(1):88-91. doi: 10.1016/0014-5793(96)00525-x. FEBS Lett. 1996. PMID: 8682213 Review.
The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba.
Bapteste E, Brinkmann H, Lee JA, Moore DV, Sensen CW, Gordon P, Duruflé L, Gaasterland T, Lopez P, Müller M, Philippe H. Bapteste E, et al. Among authors: sensen cw. Proc Natl Acad Sci U S A. 2002 Feb 5;99(3):1414-9. doi: 10.1073/pnas.032662799. Proc Natl Acad Sci U S A. 2002. PMID: 11830664 Free PMC article.
The phylogenetic position of the pelobiont Mastigamoeba balamuthi based on sequences of rDNA and translation elongation factors EF-1alpha and EF-2.
Arisue N, Hashimot T, Lee JA, Moore DV, Gordon P, Sensen CW, Gaasterland T, Hasegawa M, Müller M. Arisue N, et al. Among authors: sensen cw. J Eukaryot Microbiol. 2002 Jan-Feb;49(1):1-10. doi: 10.1111/j.1550-7408.2002.tb00332.x. J Eukaryot Microbiol. 2002. PMID: 11908892
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