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6,648 results
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An interactive power analysis tool for microarray hypothesis testing and generation.
Seo J, Gordish-Dressman H, Hoffman EP. Seo J, et al. Bioinformatics. 2006 Apr 1;22(7):808-14. doi: 10.1093/bioinformatics/btk052. Epub 2006 Jan 17. Bioinformatics. 2006. PMID: 16418236
Probe set algorithms: is there a rational best bet?
Seo J, Hoffman EP. Seo J, et al. BMC Bioinformatics. 2006 Aug 30;7:395. doi: 10.1186/1471-2105-7-395. BMC Bioinformatics. 2006. PMID: 16942624 Free PMC article.
Nuclear envelope dystrophies show a transcriptional fingerprint suggesting disruption of Rb-MyoD pathways in muscle regeneration.
Bakay M, Wang Z, Melcon G, Schiltz L, Xuan J, Zhao P, Sartorelli V, Seo J, Pegoraro E, Angelini C, Shneiderman B, Escolar D, Chen YW, Winokur ST, Pachman LM, Fan C, Mandler R, Nevo Y, Gordon E, Zhu Y, Dong Y, Wang Y, Hoffman EP. Bakay M, et al. Brain. 2006 Apr;129(Pt 4):996-1013. doi: 10.1093/brain/awl023. Epub 2006 Feb 14. Brain. 2006. PMID: 16478798
In vivo filtering of in vitro expression data reveals MyoD targets.
Zhao P, Seo J, Wang Z, Wang Y, Shneiderman B, Hoffman EP. Zhao P, et al. C R Biol. 2003 Oct-Nov;326(10-11):1049-65. doi: 10.1016/j.crvi.2003.09.035. C R Biol. 2003. PMID: 14744113
Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.
Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP. Seo J, et al. Bioinformatics. 2004 Nov 1;20(16):2534-44. doi: 10.1093/bioinformatics/bth280. Epub 2004 Apr 29. Bioinformatics. 2004. PMID: 15117752
GOTreePlus: an interactive gene ontology browser.
Lee B, Brown K, Hathout Y, Seo J. Lee B, et al. Bioinformatics. 2008 Apr 1;24(7):1026-8. doi: 10.1093/bioinformatics/btn068. Epub 2008 Feb 21. Bioinformatics. 2008. PMID: 18292113
XCluSim: a visual analytics tool for interactively comparing multiple clustering results of bioinformatics data.
L'Yi S, Ko B, Shin D, Cho YJ, Lee J, Kim B, Seo J. L'Yi S, et al. BMC Bioinformatics. 2015;16 Suppl 11(Suppl 11):S5. doi: 10.1186/1471-2105-16-S11-S5. Epub 2015 Aug 13. BMC Bioinformatics. 2015. PMID: 26328893 Free PMC article.
miRTarVis+: Web-based interactive visual analytics tool for microRNA target predictions.
L'Yi S, Jung D, Oh M, Kim B, Freishtat RJ, Giri M, Hoffman E, Seo J. L'Yi S, et al. Methods. 2017 Jul 15;124:78-88. doi: 10.1016/j.ymeth.2017.06.004. Epub 2017 Jun 7. Methods. 2017. PMID: 28600227
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