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Molecular definition of breast tumor heterogeneity.
Shipitsin M, Campbell LL, Argani P, Weremowicz S, Bloushtain-Qimron N, Yao J, Nikolskaya T, Serebryiskaya T, Beroukhim R, Hu M, Halushka MK, Sukumar S, Parker LM, Anderson KS, Harris LN, Garber JE, Richardson AL, Schnitt SJ, Nikolsky Y, Gelman RS, Polyak K. Shipitsin M, et al. Among authors: Serebryiskaya T. Cancer Cell. 2007 Mar;11(3):259-73. doi: 10.1016/j.ccr.2007.01.013. Cancer Cell. 2007. PMID: 17349583 Free article.
Reconstitution of the ERG Gene Expression Network Reveals New Biomarkers and Therapeutic Targets in ERG Positive Prostate Tumors.
Dubovenko A, Serebryiskaya T, Nikolsky Y, Nikolskaya T, Perlina A, JeBailey L, Bureeva S, Katta S, Srivastava S, Dobi A, Khasanova T. Dubovenko A, et al. Among authors: Serebryiskaya T. J Cancer. 2015 Apr 1;6(6):490-501. doi: 10.7150/jca.8213. eCollection 2015. J Cancer. 2015. PMID: 26000039 Free PMC article.
Genome-wide functional synergy between amplified and mutated genes in human breast cancer.
Nikolsky Y, Sviridov E, Yao J, Dosymbekov D, Ustyansky V, Kaznacheev V, Dezso Z, Mulvey L, Macconaill LE, Winckler W, Serebryiskaya T, Nikolskaya T, Polyak K. Nikolsky Y, et al. Among authors: Serebryiskaya T. Cancer Res. 2008 Nov 15;68(22):9532-40. doi: 10.1158/0008-5472.CAN-08-3082. Cancer Res. 2008. PMID: 19010930 Free article.
Functional analysis of multiple genomic signatures demonstrates that classification algorithms choose phenotype-related genes.
Shi W, Bessarabova M, Dosymbekov D, Dezso Z, Nikolskaya T, Dudoladova M, Serebryiskaya T, Bugrim A, Guryanov A, Brennan RJ, Shah R, Dopazo J, Chen M, Deng Y, Shi T, Jurman G, Furlanello C, Thomas RS, Corton JC, Tong W, Shi L, Nikolsky Y. Shi W, et al. Among authors: Serebryiskaya T. Pharmacogenomics J. 2010 Aug;10(4):310-23. doi: 10.1038/tpj.2010.35. Pharmacogenomics J. 2010. PMID: 20676069 Free PMC article.
Algorithms for network analysis in systems-ADME/Tox using the MetaCore and MetaDrug platforms.
Ekins S, Bugrim A, Brovold L, Kirillov E, Nikolsky Y, Rakhmatulin E, Sorokina S, Ryabov A, Serebryiskaya T, Melnikov A, Metz J, Nikolskaya T. Ekins S, et al. Among authors: Serebryiskaya T. Xenobiotica. 2006 Oct-Nov;36(10-11):877-901. doi: 10.1080/00498250600861660. Xenobiotica. 2006. PMID: 17118913
MetaMiner (CF): a disease-oriented bioinformatics analysis environment.
Wright JM, Nikolsky Y, Serebryiskaya T, Wetmore DR. Wright JM, et al. Among authors: Serebryiskaya T. Methods Mol Biol. 2009;563:353-67. doi: 10.1007/978-1-60761-175-2_18. Methods Mol Biol. 2009. PMID: 19597794
Manual annotation of protein interactions.
Bureeva S, Zvereva S, Romanov V, Serebryiskaya T. Bureeva S, et al. Among authors: Serebryiskaya T. Methods Mol Biol. 2009;563:75-95. doi: 10.1007/978-1-60761-175-2_5. Methods Mol Biol. 2009. PMID: 19597781
Network analysis of human glaucomatous optic nerve head astrocytes.
Nikolskaya T, Nikolsky Y, Serebryiskaya T, Zvereva S, Sviridov E, Dezso Z, Rahkmatulin E, Brennan RJ, Yankovsky N, Bhattacharya SK, Agapova O, Hernandez MR, Shestopalov VI. Nikolskaya T, et al. Among authors: Serebryiskaya T. BMC Med Genomics. 2009 May 9;2:24. doi: 10.1186/1755-8794-2-24. BMC Med Genomics. 2009. PMID: 19426536 Free PMC article.
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