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MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene products.
Serres MH, Riley M. Serres MH, et al. Microb Comp Genomics. 2000;5(4):205-22. doi: 10.1089/omi.1.2000.5.205. Microb Comp Genomics. 2000. PMID: 11471834
A functional update of the Escherichia coli K-12 genome.
Serres MH, Gopal S, Nahum LA, Liang P, Gaasterland T, Riley M. Serres MH, et al. Genome Biol. 2001;2(9):RESEARCH0035. doi: 10.1186/gb-2001-2-9-research0035. Epub 2001 Aug 20. Genome Biol. 2001. PMID: 11574054 Free PMC article.
Interim report on genomics of Escherichia coli.
Riley M, Serres MH. Riley M, et al. Among authors: serres mh. Annu Rev Microbiol. 2000;54:341-411. doi: 10.1146/annurev.micro.54.1.341. Annu Rev Microbiol. 2000. PMID: 11018132 Review.
Evolution by leaps: gene duplication in bacteria.
Serres MH, Kerr AR, McCormack TJ, Riley M. Serres MH, et al. Biol Direct. 2009 Nov 23;4:46. doi: 10.1186/1745-6150-4-46. Biol Direct. 2009. PMID: 19930658 Free PMC article.
Protein families reflect the metabolic diversity of organisms and provide support for functional prediction.
Nahum LA, Goswami S, Serres MH. Nahum LA, et al. Among authors: serres mh. Physiol Genomics. 2009 Aug 7;38(3):250-60. doi: 10.1152/physiolgenomics.90244.2008. Epub 2009 Jun 2. Physiol Genomics. 2009. PMID: 19491149
Genomic analysis of carbon source metabolism of Shewanella oneidensis MR-1: Predictions versus experiments.
Serres MH, Riley M. Serres MH, et al. J Bacteriol. 2006 Jul;188(13):4601-9. doi: 10.1128/JB.01787-05. J Bacteriol. 2006. PMID: 16788168 Free PMC article.
Escherichia coli K-12: a cooperatively developed annotation snapshot--2005.
Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD, Horiuchi T, Keseler IM, Kosuge T, Mori H, Perna NT, Plunkett G 3rd, Rudd KE, Serres MH, Thomas GH, Thomson NR, Wishart D, Wanner BL. Riley M, et al. Among authors: serres mh. Nucleic Acids Res. 2006 Jan 5;34(1):1-9. doi: 10.1093/nar/gkj405. Print 2006. Nucleic Acids Res. 2006. PMID: 16397293 Free PMC article.
Gene fusions and gene duplications: relevance to genomic annotation and functional analysis.
Serres MH, Riley M. Serres MH, et al. BMC Genomics. 2005 Mar 9;6:33. doi: 10.1186/1471-2164-6-33. BMC Genomics. 2005. PMID: 15757509 Free PMC article.
GenProtEC: an updated and improved analysis of functions of Escherichia coli K-12 proteins.
Serres MH, Goswami S, Riley M. Serres MH, et al. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D300-2. doi: 10.1093/nar/gkh087. Nucleic Acids Res. 2004. PMID: 14681418 Free PMC article.
Structural domains, protein modules, and sequence similarities enrich our understanding of the Shewanella oneidensis MR-1 proteome.
Serres MH, Riley M. Serres MH, et al. OMICS. 2004 Winter;8(4):306-21. doi: 10.1089/omi.2004.8.306. OMICS. 2004. PMID: 15703478
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