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Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation.
Thomas AM, Manghi P, Asnicar F, Pasolli E, Armanini F, Zolfo M, Beghini F, Manara S, Karcher N, Pozzi C, Gandini S, Serrano D, Tarallo S, Francavilla A, Gallo G, Trompetto M, Ferrero G, Mizutani S, Shiroma H, Shiba S, Shibata T, Yachida S, Yamada T, Wirbel J, Schrotz-King P, Ulrich CM, Brenner H, Arumugam M, Bork P, Zeller G, Cordero F, Dias-Neto E, Setubal JC, Tett A, Pardini B, Rescigno M, Waldron L, Naccarati A, Segata N. Thomas AM, et al. Among authors: setubal jc. Nat Med. 2019 Apr;25(4):667-678. doi: 10.1038/s41591-019-0405-7. Epub 2019 Apr 1. Nat Med. 2019. PMID: 30936548 Free PMC article.
Author Correction: Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation.
Thomas AM, Manghi P, Asnicar F, Pasolli E, Armanini F, Zolfo M, Beghini F, Manara S, Karcher N, Pozzi C, Gandini S, Serrano D, Tarallo S, Francavilla A, Gallo G, Trompetto M, Ferrero G, Mizutani S, Shiroma H, Shiba S, Shibata T, Yachida S, Yamada T, Wirbel J, Schrotz-King P, Ulrich CM, Brenner H, Arumugam M, Bork P, Zeller G, Cordero F, Dias-Neto E, Setubal JC, Tett A, Pardini B, Rescigno M, Waldron L, Naccarati A, Segata N. Thomas AM, et al. Among authors: setubal jc. Nat Med. 2019 Dec;25(12):1948. doi: 10.1038/s41591-019-0663-4. Nat Med. 2019. PMID: 31664237
Tissue-Associated Bacterial Alterations in Rectal Carcinoma Patients Revealed by 16S rRNA Community Profiling.
Thomas AM, Jesus EC, Lopes A, Aguiar S Jr, Begnami MD, Rocha RM, Carpinetti PA, Camargo AA, Hoffmann C, Freitas HC, Silva IT, Nunes DN, Setubal JC, Dias-Neto E. Thomas AM, et al. Among authors: setubal jc. Front Cell Infect Microbiol. 2016 Dec 9;6:179. doi: 10.3389/fcimb.2016.00179. eCollection 2016. Front Cell Infect Microbiol. 2016. PMID: 28018861 Free PMC article.
Gut Microbiota Profile of Obese Diabetic Women Submitted to Roux-en-Y Gastric Bypass and Its Association with Food Intake and Postoperative Diabetes Remission.
Al Assal K, Prifti E, Belda E, Sala P, Clément K, Dao MC, Doré J, Levenez F, Taddei CR, Fonseca DC, Rocha IM, Balmant BD, Thomas AM, Santo MA, Dias-Neto E, Setubal JC, Zucker JD, Belarmino G, Torrinhas RS, Waitzberg DL. Al Assal K, et al. Among authors: setubal jc. Nutrients. 2020 Jan 21;12(2):278. doi: 10.3390/nu12020278. Nutrients. 2020. PMID: 31973130 Free PMC article.
Comparative Metagenomics.
Maltez Thomas A, Prata Lima F, Maria Silva Moura L, Maria da Silva A, Dias-Neto E, Setubal JC. Maltez Thomas A, et al. Among authors: setubal jc. Methods Mol Biol. 2018;1704:243-260. doi: 10.1007/978-1-4939-7463-4_8. Methods Mol Biol. 2018. PMID: 29277868
A probiotic has differential effects on allergic airway inflammation in A/J and C57BL/6 mice and is correlated with the gut microbiome.
Casaro MB, Thomas AM, Mendes E, Fukumori C, Ribeiro WR, Oliveira FA, Crisma AR, Murata GM, Bizzarro B, Sá-Nunes A, Setubal JC, Mayer MPA, Martins FS, Vieira AT, Antiorio ATFB, Tavares-de-Lima W, Camara NOS, Curi R, Dias-Neto E, Ferreira CM. Casaro MB, et al. Among authors: setubal jc. Microbiome. 2021 Jun 10;9(1):134. doi: 10.1186/s40168-021-01081-2. Microbiome. 2021. PMID: 34112246 Free PMC article.
A transcriptome-based signature of pathological angiogenesis predicts breast cancer patient survival.
Guarischi-Sousa R, Monteiro JS, Alecrim LC, Michaloski JS, Cardeal LB, Ferreira EN, Carraro DM, Nunes DN, Dias-Neto E, Reimand J, Boutros PC, Setubal JC, Giordano RJ. Guarischi-Sousa R, et al. Among authors: setubal jc. PLoS Genet. 2019 Dec 17;15(12):e1008482. doi: 10.1371/journal.pgen.1008482. eCollection 2019 Dec. PLoS Genet. 2019. PMID: 31846472 Free PMC article.
Microbiomes of Field-Grown Maize and Soybean in Southeastern and Central Brazil Inferred by High-Throughput 16S and Internal Transcribed Spacer Amplicon Sequencing.
Rossmann M, Thomas AM, Guima SS, Martins LF, Inderbitzin P, Knight-Connoni V, da Silva AM, Setubal JC. Rossmann M, et al. Among authors: setubal jc. Microbiol Resour Announc. 2021 Aug 5;10(31):e0052821. doi: 10.1128/MRA.00528-21. Epub 2021 Aug 5. Microbiol Resour Announc. 2021. PMID: 34351231 Free PMC article.
Prophylactic Supplementation of Bifidobacterium longum 51A Protects Mice from Ovariectomy-Induced Exacerbated Allergic Airway Inflammation and Airway Hyperresponsiveness.
Mendes E, Acetturi BG, Thomas AM, Martins FDS, Crisma AR, Murata G, Braga TT, Camâra NOS, Franco ALDS, Setubal JC, Ribeiro WR, Valduga CJ, Curi R, Dias-Neto E, Tavares-de-Lima W, Ferreira CM. Mendes E, et al. Among authors: setubal jc. Front Microbiol. 2017 Sep 11;8:1732. doi: 10.3389/fmicb.2017.01732. eCollection 2017. Front Microbiol. 2017. PMID: 28959241 Free PMC article.
163 results