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Pattern of selective constraint in C. elegans and C. briggsae genomes.
Shabalina SA, Kondrashov AS. Shabalina SA, et al. Genet Res. 1999 Aug;74(1):23-30. doi: 10.1017/s0016672399003821. Genet Res. 1999. PMID: 10505405
Rapid decline of fitness in panmictic populations of Drosophila melanogaster maintained under relaxed natural selection.
Shabalina SA, Yampolsky LYu, Kondrashov AS. Shabalina SA, et al. Proc Natl Acad Sci U S A. 1997 Nov 25;94(24):13034-9. doi: 10.1073/pnas.94.24.13034. Proc Natl Acad Sci U S A. 1997. PMID: 9371795 Free PMC article.
Selective constraint in intergenic regions of human and mouse genomes.
Shabalina SA, Ogurtsov AY, Kondrashov VA, Kondrashov AS. Shabalina SA, et al. Trends Genet. 2001 Jul;17(7):373-6. doi: 10.1016/s0168-9525(01)02344-7. Trends Genet. 2001. PMID: 11418197
Conserved fragments of transposable elements in intergenic regions: evidence for widespread recruitment of MIR- and L2-derived sequences within the mouse and human genomes.
Silva JC, Shabalina SA, Harris DG, Spouge JL, Kondrashovi AS. Silva JC, et al. Among authors: shabalina sa. Genet Res. 2003 Aug;82(1):1-18. doi: 10.1017/s0016672303006268. Genet Res. 2003. PMID: 14621267
Analysis of similarity within 142 pairs of orthologous intergenic regions of Caenorhabditis elegans and Caenorhabditis briggsae.
Webb CT, Shabalina SA, Ogurtsov AY, Kondrashov AS. Webb CT, et al. Among authors: shabalina sa. Nucleic Acids Res. 2002 Mar 1;30(5):1233-9. doi: 10.1093/nar/30.5.1233. Nucleic Acids Res. 2002. PMID: 11861916 Free PMC article.
A hierarchical approach to aligning collinear regions of genomes.
Roytberg MA, Ogurtsov AY, Shabalina SA, Kondrashov AS. Roytberg MA, et al. Among authors: shabalina sa. Bioinformatics. 2002 Dec;18(12):1673-80. doi: 10.1093/bioinformatics/18.12.1673. Bioinformatics. 2002. PMID: 12490453
Negative correlation between expression level and evolutionary rate of long intergenic noncoding RNAs.
Managadze D, Rogozin IB, Chernikova D, Shabalina SA, Koonin EV. Managadze D, et al. Among authors: shabalina sa. Genome Biol Evol. 2011;3:1390-404. doi: 10.1093/gbe/evr116. Epub 2011 Nov 9. Genome Biol Evol. 2011. PMID: 22071789 Free PMC article.
Connections between alternative transcription and alternative splicing in mammals.
Shabalina SA, Spiridonov AN, Spiridonov NA, Koonin EV. Shabalina SA, et al. Genome Biol Evol. 2010;2:791-9. doi: 10.1093/gbe/evq058. Epub 2010 Oct 1. Genome Biol Evol. 2010. PMID: 20889654 Free PMC article.
Persistence time of loss-of-function mutations at nonessential loci affecting eye color in Drosophila melanogaster.
Yampolsky LY, Allen C, Shabalina SA, Kondrashov AS. Yampolsky LY, et al. Among authors: shabalina sa. Genetics. 2005 Dec;171(4):2133-8. doi: 10.1534/genetics.105.046094. Epub 2005 Aug 22. Genetics. 2005. PMID: 16118190 Free PMC article.
Abundance of type I toxin-antitoxin systems in bacteria: searches for new candidates and discovery of novel families.
Fozo EM, Makarova KS, Shabalina SA, Yutin N, Koonin EV, Storz G. Fozo EM, et al. Among authors: shabalina sa. Nucleic Acids Res. 2010 Jun;38(11):3743-59. doi: 10.1093/nar/gkq054. Epub 2010 Feb 15. Nucleic Acids Res. 2010. PMID: 20156992 Free PMC article.
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