Shafer R - Search Results

1

Assessment of automated genotyping protocols as tools for surveillance of HIV-1 genetic diversity.

Gifford R, de Oliveira T, Rambaut A, Myers RE, Gale CV, Dunn D, Shafer R, Vandamme AM, Kellam P, Pillay D; UK Collaborative Group on HIV Drug Resistance. Gifford R, et al. Among authors: shafer r. AIDS. 2006 Jul 13;20(11):1521-9. doi: 10.1097/01.aids.0000237368.64488.ae. AIDS. 2006. PMID: 16847407

2

Highly drug-resistant HIV-1 clinical isolates are cross-resistant to many antiretroviral compounds in current clinical development.

Palmer S, Shafer RW, Merigan TC. Palmer S, et al. Among authors: shafer rw. AIDS. 1999 Apr 16;13(6):661-7. doi: 10.1097/00002030-199904160-00006. AIDS. 1999. PMID: 10397560 Free PMC article.

3

HIV-1 protease and reverse transcriptase mutation patterns responsible for discordances between genotypic drug resistance interpretation algorithms.

Ravela J, Betts BJ, Brun-Vézinet F, Vandamme AM, Descamps D, van Laethem K, Smith K, Schapiro JM, Winslow DL, Reid C, Shafer RW. Ravela J, et al. J Acquir Immune Defic Syndr. 2003 May 1;33(1):8-14. doi: 10.1097/00126334-200305010-00002. J Acquir Immune Defic Syndr. 2003. PMID: 12792349 Free PMC article.

4

HIV sequence databases.

Kuiken C, Korber B, Shafer RW. Kuiken C, et al. AIDS Rev. 2003 Jan-Mar;5(1):52-61. AIDS Rev. 2003. PMID: 12875108 Free PMC article. Review.

5

Evolution of resistance to drugs in HIV-1-infected patients failing antiretroviral therapy.

Kantor R, Shafer RW, Follansbee S, Taylor J, Shilane D, Hurley L, Nguyen DP, Katzenstein D, Fessel WJ. Kantor R, et al. Among authors: shafer rw. AIDS. 2004 Jul 23;18(11):1503-11. doi: 10.1097/01.aids.0000131358.29586.6b. AIDS. 2004. PMID: 15238768 Free PMC article.

6

Panel of prototypical infectious molecular HIV-1 clones containing multiple nucleoside reverse transcriptase inhibitor resistance mutations.

Johnston E, Dupnik KM, Gonzales MJ, Winters MA, Rhee SY, Imamichi T, Shafer RW. Johnston E, et al. AIDS. 2005 Apr 29;19(7):731-3. doi: 10.1097/01.aids.0000166098.54564.0c. AIDS. 2005. PMID: 15821401 Free PMC article.

7

Impact of HIV-1 subtype and antiretroviral therapy on protease and reverse transcriptase genotype: results of a global collaboration.

Kantor R, Katzenstein DA, Efron B, Carvalho AP, Wynhoven B, Cane P, Clarke J, Sirivichayakul S, Soares MA, Snoeck J, Pillay C, Rudich H, Rodrigues R, Holguin A, Ariyoshi K, Bouzas MB, Cahn P, Sugiura W, Soriano V, Brigido LF, Grossman Z, Morris L, Vandamme AM, Tanuri A, Phanuphak P, Weber JN, Pillay D, Harrigan PR, Camacho R, Schapiro JM, Shafer RW. Kantor R, et al. Among authors: shafer rw. PLoS Med. 2005 Apr;2(4):e112. doi: 10.1371/journal.pmed.0020112. Epub 2005 Apr 26. PLoS Med. 2005. PMID: 15839752 Free PMC article.

8

Discordances between interpretation algorithms for genotypic resistance to protease and reverse transcriptase inhibitors of human immunodeficiency virus are subtype dependent.

Snoeck J, Kantor R, Shafer RW, Van Laethem K, Deforche K, Carvalho AP, Wynhoven B, Soares MA, Cane P, Clarke J, Pillay C, Sirivichayakul S, Ariyoshi K, Holguin A, Rudich H, Rodrigues R, Bouzas MB, Brun-Vézinet F, Reid C, Cahn P, Brigido LF, Grossman Z, Soriano V, Sugiura W, Phanuphak P, Morris L, Weber J, Pillay D, Tanuri A, Harrigan RP, Camacho R, Schapiro JM, Katzenstein D, Vandamme AM. Snoeck J, et al. Among authors: shafer rw. Antimicrob Agents Chemother. 2006 Feb;50(2):694-701. doi: 10.1128/AAC.50.2.694-701.2006. Antimicrob Agents Chemother. 2006. PMID: 16436728 Free PMC article.

9

HIV-1 pol mutation frequency by subtype and treatment experience: extension of the HIVseq program to seven non-B subtypes.

Rhee SY, Kantor R, Katzenstein DA, Camacho R, Morris L, Sirivichayakul S, Jorgensen L, Brigido LF, Schapiro JM, Shafer RW; International Non Subtype B HIV-1 Working Group. Rhee SY, et al. Among authors: shafer rw. AIDS. 2006 Mar 21;20(5):643-51. doi: 10.1097/01.aids.0000216363.36786.2b. AIDS. 2006. PMID: 16514293 Free PMC article.

10

HIV-1 protease and reverse transcriptase mutations for drug resistance surveillance.

Shafer RW, Rhee SY, Pillay D, Miller V, Sandstrom P, Schapiro JM, Kuritzkes DR, Bennett D. Shafer RW, et al. AIDS. 2007 Jan 11;21(2):215-23. doi: 10.1097/QAD.0b013e328011e691. AIDS. 2007. PMID: 17197813 Free PMC article. Review.

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