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A-form conformational motifs in ligand-bound DNA structures.
Lu XJ, Shakked Z, Olson WK. Lu XJ, et al. Among authors: shakked z. J Mol Biol. 2000 Jul 21;300(4):819-40. doi: 10.1006/jmbi.2000.3690. J Mol Biol. 2000. PMID: 10891271
Predicting indirect readout effects in protein-DNA interactions.
Zhang Y, Xi Z, Hegde RS, Shakked Z, Crothers DM. Zhang Y, et al. Among authors: shakked z. Proc Natl Acad Sci U S A. 2004 Jun 1;101(22):8337-41. doi: 10.1073/pnas.0402319101. Epub 2004 May 17. Proc Natl Acad Sci U S A. 2004. PMID: 15148366 Free PMC article.
Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs.
Kitayner M, Rozenberg H, Rohs R, Suad O, Rabinovich D, Honig B, Shakked Z. Kitayner M, et al. Among authors: shakked z. Nat Struct Mol Biol. 2010 Apr;17(4):423-9. doi: 10.1038/nsmb.1800. Epub 2010 Apr 4. Nat Struct Mol Biol. 2010. PMID: 20364130 Free PMC article.
Structure-function analysis of the acyl carrier protein synthase (AcpS) from Mycobacterium tuberculosis.
Dym O, Albeck S, Peleg Y, Schwarz A, Shakked Z, Burstein Y, Zimhony O. Dym O, et al. Among authors: shakked z. J Mol Biol. 2009 Nov 6;393(4):937-50. doi: 10.1016/j.jmb.2009.08.065. Epub 2009 Sep 3. J Mol Biol. 2009. PMID: 19733180
Structural basis of restoring sequence-specific DNA binding and transactivation to mutant p53 by suppressor mutations.
Suad O, Rozenberg H, Brosh R, Diskin-Posner Y, Kessler N, Shimon LJ, Frolow F, Liran A, Rotter V, Shakked Z. Suad O, et al. Among authors: shakked z. J Mol Biol. 2009 Jan 9;385(1):249-65. doi: 10.1016/j.jmb.2008.10.063. Epub 2008 Oct 30. J Mol Biol. 2009. PMID: 18996393
Structural basis of DNA recognition by p53 tetramers.
Kitayner M, Rozenberg H, Kessler N, Rabinovich D, Shaulov L, Haran TE, Shakked Z. Kitayner M, et al. Among authors: shakked z. Mol Cell. 2006 Jun 23;22(6):741-53. doi: 10.1016/j.molcel.2006.05.015. Mol Cell. 2006. PMID: 16793544
Structures of the DNA-binding site of Runt-domain transcription regulators.
Kitayner M, Rozenberg H, Rabinovich D, Shakked Z. Kitayner M, et al. Among authors: shakked z. Acta Crystallogr D Biol Crystallogr. 2005 Mar;61(Pt 3):236-46. doi: 10.1107/S0907444904032378. Epub 2005 Feb 24. Acta Crystallogr D Biol Crystallogr. 2005. PMID: 15735333
Left-handed DNA crossovers. Implications for DNA-DNA recognition and structural alterations.
Timsit Y, Shatzky-Schwartz M, Shakked Z. Timsit Y, et al. Among authors: shakked z. J Biomol Struct Dyn. 1999 Feb;16(4):775-85. doi: 10.1080/07391102.1999.10508292. J Biomol Struct Dyn. 1999. PMID: 10217449
Structural code for DNA recognition revealed in crystal structures of papillomavirus E2-DNA targets.
Rozenberg H, Rabinovich D, Frolow F, Hegde RS, Shakked Z. Rozenberg H, et al. Among authors: shakked z. Proc Natl Acad Sci U S A. 1998 Dec 22;95(26):15194-9. doi: 10.1073/pnas.95.26.15194. Proc Natl Acad Sci U S A. 1998. PMID: 9860945 Free PMC article.
On the potential role of the amino nitrogen atom as a hydrogen bond acceptor in macromolecules.
Luisi B, Orozco M, Sponer J, Luque FJ, Shakked Z. Luisi B, et al. Among authors: shakked z. J Mol Biol. 1998 Jun 26;279(5):1123-36. doi: 10.1006/jmbi.1998.1833. J Mol Biol. 1998. PMID: 9642089
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