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14 results
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Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing.
Shamimuzzaman M, Vodkin L. Shamimuzzaman M, et al. BMC Genomics. 2012 Jul 16;13:310. doi: 10.1186/1471-2164-13-310. BMC Genomics. 2012. PMID: 22799740 Free PMC article.
Genome-wide identification of binding sites for NAC and YABBY transcription factors and co-regulated genes during soybean seedling development by ChIP-Seq and RNA-Seq.
Shamimuzzaman M, Vodkin L. Shamimuzzaman M, et al. BMC Genomics. 2013 Jul 16;14:477. doi: 10.1186/1471-2164-14-477. BMC Genomics. 2013. PMID: 23865409 Free PMC article.
Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling.
Shamimuzzaman M, Vodkin L. Shamimuzzaman M, et al. Funct Integr Genomics. 2014 Dec;14(4):683-96. doi: 10.1007/s10142-014-0388-x. Epub 2014 Jul 29. Funct Integr Genomics. 2014. PMID: 25070765
Direct detection of transcription factors in cotyledons during seedling development using sensitive silicon-substrate photonic crystal protein arrays.
Jones SI, Tan Y, Shamimuzzaman M, George S, Cunningham BT, Vodkin L. Jones SI, et al. Among authors: shamimuzzaman m. Plant Physiol. 2015 Mar;167(3):639-49. doi: 10.1104/pp.114.253666. Epub 2015 Jan 29. Plant Physiol. 2015. PMID: 25635113 Free PMC article.
Ribosome profiling reveals changes in translational status of soybean transcripts during immature cotyledon development.
Shamimuzzaman M, Vodkin L. Shamimuzzaman M, et al. PLoS One. 2018 Mar 23;13(3):e0194596. doi: 10.1371/journal.pone.0194596. eCollection 2018. PLoS One. 2018. PMID: 29570733 Free PMC article.
Genome-wide profiling of piRNAs in the whitefly Bemisia tabaci reveals cluster distribution and association with begomovirus transmission.
Shamimuzzaman M, Hasegawa DK, Chen W, Simmons AM, Fei Z, Ling KS. Shamimuzzaman M, et al. PLoS One. 2019 Mar 12;14(3):e0213149. doi: 10.1371/journal.pone.0213149. eCollection 2019. PLoS One. 2019. PMID: 30861037 Free PMC article.
The regulatory landscape of early maize inflorescence development.
Parvathaneni RK, Bertolini E, Shamimuzzaman M, Vera DL, Lung PY, Rice BR, Zhang J, Brown PJ, Lipka AE, Bass HW, Eveland AL. Parvathaneni RK, et al. Among authors: shamimuzzaman m. Genome Biol. 2020 Jul 6;21(1):165. doi: 10.1186/s13059-020-02070-8. Genome Biol. 2020. PMID: 32631399 Free PMC article.
Understanding the Transmissibility of Cucumber Green Mottle Mosaic Virus in Watermelon Seeds and Seed Health Assays.
Sui X, Li R, Shamimuzzaman M, Wu Z, Ling KS. Sui X, et al. Among authors: shamimuzzaman m. Plant Dis. 2019 Jun;103(6):1126-1131. doi: 10.1094/PDIS-10-18-1787-RE. Epub 2019 Apr 17. Plant Dis. 2019. PMID: 30995423
The bottle gourd genome provides insights into Cucurbitaceae evolution and facilitates mapping of a Papaya ring-spot virus resistance locus.
Wu S, Shamimuzzaman M, Sun H, Salse J, Sui X, Wilder A, Wu Z, Levi A, Xu Y, Ling KS, Fei Z. Wu S, et al. Among authors: shamimuzzaman m. Plant J. 2017 Dec;92(5):963-975. doi: 10.1111/tpj.13722. Epub 2017 Nov 12. Plant J. 2017. PMID: 28940759 Free article.
MaizeMine: A Data Mining Warehouse for the Maize Genetics and Genomics Database.
Shamimuzzaman M, Gardiner JM, Walsh AT, Triant DA, Le Tourneau JJ, Tayal A, Unni DR, Nguyen HN, Portwood JL 2nd, Cannon EKS, Andorf CM, Elsik CG. Shamimuzzaman M, et al. Front Plant Sci. 2020 Oct 22;11:592730. doi: 10.3389/fpls.2020.592730. eCollection 2020. Front Plant Sci. 2020. PMID: 33193550 Free PMC article.
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