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CyloFold: secondary structure prediction including pseudoknots.
Bindewald E, Kluth T, Shapiro BA. Bindewald E, et al. Among authors: shapiro ba. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W368-72. doi: 10.1093/nar/gkq432. Epub 2010 May 25. Nucleic Acids Res. 2010. PMID: 20501603 Free PMC article.
Detection of common motifs in RNA secondary structures.
Margalit H, Shapiro BA, Oppenheim AB, Maizel JV Jr. Margalit H, et al. Among authors: shapiro ba. Nucleic Acids Res. 1989 Jun 26;17(12):4829-45. doi: 10.1093/nar/17.12.4829. Nucleic Acids Res. 1989. PMID: 2473442 Free PMC article.
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