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CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III.
Deltcheva E, Chylinski K, Sharma CM, Gonzales K, Chao Y, Pirzada ZA, Eckert MR, Vogel J, Charpentier E. Deltcheva E, et al. Nature. 2011 Mar 31;471(7340):602-7. doi: 10.1038/nature09886. Nature. 2011. PMID: 21455174 Free PMC article.
Experimental tools to identify RNA-protein interactions in Helicobacter pylori.
Rieder R, Reinhardt R, Sharma C, Vogel J. Rieder R, et al. RNA Biol. 2012 Apr;9(4):520-31. doi: 10.4161/rna.20331. Epub 2012 Apr 1. RNA Biol. 2012. PMID: 22546936
How to find small non-coding RNAs in bacteria.
Vogel J, Sharma CM. Vogel J, et al. Biol Chem. 2005 Dec;386(12):1219-38. doi: 10.1515/BC.2005.140. Biol Chem. 2005. PMID: 16336117 Review.
Differential RNA-seq: the approach behind and the biological insight gained.
Sharma CM, Vogel J. Sharma CM, et al. Curr Opin Microbiol. 2014 Jun;19:97-105. doi: 10.1016/j.mib.2014.06.010. Epub 2014 Jul 12. Curr Opin Microbiol. 2014. PMID: 25024085
The primary transcriptome of the major human pathogen Helicobacter pylori.
Sharma CM, Hoffmann S, Darfeuille F, Reignier J, Findeiss S, Sittka A, Chabas S, Reiche K, Hackerm├╝ller J, Reinhardt R, Stadler PF, Vogel J. Sharma CM, et al. Nature. 2010 Mar 11;464(7286):250-5. doi: 10.1038/nature08756. Epub 2010 Feb 17. Nature. 2010. PMID: 20164839
CRISPR RNA-Dependent Binding and Cleavage of Endogenous RNAs by the Campylobacter jejuni Cas9.
Dugar G, Leenay RT, Eisenbart SK, Bischler T, Aul BU, Beisel CL, Sharma CM. Dugar G, et al. Mol Cell. 2018 Mar 1;69(5):893-905.e7. doi: 10.1016/j.molcel.2018.01.032. Mol Cell. 2018. PMID: 29499139 Free PMC article.
Investigating CRISPR RNA Biogenesis and Function Using RNA-seq.
Heidrich N, Dugar G, Vogel J, Sharma CM. Heidrich N, et al. Methods Mol Biol. 2015;1311:1-21. doi: 10.1007/978-1-4939-2687-9_1. Methods Mol Biol. 2015. PMID: 25981463
Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA.
Sharma CM, Papenfort K, Pernitzsch SR, Mollenkopf HJ, Hinton JC, Vogel J. Sharma CM, et al. Mol Microbiol. 2011 Sep;81(5):1144-65. doi: 10.1111/j.1365-2958.2011.07751.x. Epub 2011 Jul 27. Mol Microbiol. 2011. PMID: 21696468
RNA Localization in Bacteria.
Fei J, Sharma CM. Fei J, et al. Microbiol Spectr. 2018 Sep;6(5):10.1128/microbiolspec.RWR-0024-2018. doi: 10.1128/microbiolspec.RWR-0024-2018. Microbiol Spectr. 2018. PMID: 30191804 Free PMC article. Review.
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