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The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications.
Sharp PM, Li WH. Sharp PM, et al. Nucleic Acids Res. 1987 Feb 11;15(3):1281-95. doi: 10.1093/nar/15.3.1281. Nucleic Acids Res. 1987. PMID: 3547335 Free PMC article.
Synonymous codon usage in Cryptosporidium parvum: identification of two distinct trends among genes.
Grocock RJ, Sharp PM. Grocock RJ, et al. Among authors: sharp pm. Int J Parasitol. 2001 Apr;31(4):402-12. doi: 10.1016/s0020-7519(01)00129-1. Int J Parasitol. 2001. PMID: 11306119
Absence of translationally selected synonymous codon usage bias in Helicobacter pylori.
Lafay B, Atherton JC, Sharp PM. Lafay B, et al. Among authors: sharp pm. Microbiology (Reading). 2000 Apr;146 ( Pt 4):851-860. doi: 10.1099/00221287-146-4-851. Microbiology (Reading). 2000. PMID: 10784043
Synonymous codon usage variation among Giardia lamblia genes and isolates.
Lafay B, Sharp PM. Lafay B, et al. Among authors: sharp pm. Mol Biol Evol. 1999 Nov;16(11):1484-95. doi: 10.1093/oxfordjournals.molbev.a026060. Mol Biol Evol. 1999. PMID: 10555279
Proteome composition and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases.
Lafay B, Lloyd AT, McLean MJ, Devine KM, Sharp PM, Wolfe KH. Lafay B, et al. Among authors: sharp pm. Nucleic Acids Res. 1999 Apr 1;27(7):1642-9. doi: 10.1093/nar/27.7.1642. Nucleic Acids Res. 1999. PMID: 10075995 Free PMC article.
An evolutionary perspective on synonymous codon usage in unicellular organisms.
Sharp PM, Li WH. Sharp PM, et al. J Mol Evol. 1986;24(1-2):28-38. doi: 10.1007/BF02099948. J Mol Evol. 1986. PMID: 3104616
Codon usage and base composition in Rickettsia prowazekii.
Andersson SG, Sharp PM. Andersson SG, et al. Among authors: sharp pm. J Mol Evol. 1996 May;42(5):525-36. doi: 10.1007/BF02352282. J Mol Evol. 1996. PMID: 8662004
The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias.
Sharp PM, Li WH. Sharp PM, et al. Mol Biol Evol. 1987 May;4(3):222-30. doi: 10.1093/oxfordjournals.molbev.a040443. Mol Biol Evol. 1987. PMID: 3328816
Does the 'non-coding' strand code?
Sharp PM. Sharp PM. Nucleic Acids Res. 1985 Feb 25;13(4):1389-97. doi: 10.1093/nar/13.4.1389. Nucleic Acids Res. 1985. PMID: 3889840 Free PMC article.
Codon usage in Caenorhabditis elegans: delineation of translational selection and mutational biases.
Stenico M, Lloyd AT, Sharp PM. Stenico M, et al. Among authors: sharp pm. Nucleic Acids Res. 1994 Jul 11;22(13):2437-46. doi: 10.1093/nar/22.13.2437. Nucleic Acids Res. 1994. PMID: 8041603 Free PMC article.
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