Shen Y - Search Results

1

X-inactivation in female human embryonic stem cells is in a nonrandom pattern and prone to epigenetic alterations.

Shen Y, Matsuno Y, Fouse SD, Rao N, Root S, Xu R, Pellegrini M, Riggs AD, Fan G. Shen Y, et al. Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4709-14. doi: 10.1073/pnas.0712018105. Epub 2008 Mar 13. Proc Natl Acad Sci U S A. 2008. PMID: 18339804 Free PMC article.

2

DNA methylation controls the timing of astrogliogenesis through regulation of JAK-STAT signaling.

Fan G, Martinowich K, Chin MH, He F, Fouse SD, Hutnick L, Hattori D, Ge W, Shen Y, Wu H, ten Hoeve J, Shuai K, Sun YE. Fan G, et al. Among authors: shen y. Development. 2005 Aug;132(15):3345-56. doi: 10.1242/dev.01912. Development. 2005. PMID: 16014513 Free article.

3

Abnormal CpG island methylation occurs during in vitro differentiation of human embryonic stem cells.

Shen Y, Chow J, Wang Z, Fan G. Shen Y, et al. Hum Mol Genet. 2006 Sep 1;15(17):2623-35. doi: 10.1093/hmg/ddl188. Epub 2006 Jul 26. Hum Mol Genet. 2006. PMID: 16870691

4

Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3 K4/K27 trimethylation.

Fouse SD, Shen Y, Pellegrini M, Cole S, Meissner A, Van Neste L, Jaenisch R, Fan G. Fouse SD, et al. Among authors: shen y. Cell Stem Cell. 2008 Feb 7;2(2):160-9. doi: 10.1016/j.stem.2007.12.011. Cell Stem Cell. 2008. PMID: 18371437 Free PMC article.

5

Genome-wide DNA methylation profiling: the mDIP-chip technology.

Shen Y, Fouse SD, Fan G. Shen Y, et al. Methods Mol Biol. 2009;568:203-16. doi: 10.1007/978-1-59745-280-9_13. Methods Mol Biol. 2009. PMID: 19582429

6

Functional modules distinguish human induced pluripotent stem cells from embryonic stem cells.

Wang A, Huang K, Shen Y, Xue Z, Cai C, Horvath S, Fan G. Wang A, et al. Among authors: shen y. Stem Cells Dev. 2011 Nov;20(11):1937-50. doi: 10.1089/scd.2010.0574. Epub 2011 Jun 20. Stem Cells Dev. 2011. PMID: 21542696 Free PMC article.

7

A panel of CpG methylation sites distinguishes human embryonic stem cells and induced pluripotent stem cells.

Huang K, Shen Y, Xue Z, Bibikova M, April C, Liu Z, Cheng L, Nagy A, Pellegrini M, Fan JB, Fan G. Huang K, et al. Among authors: shen y. Stem Cell Reports. 2013 Dec 26;2(1):36-43. doi: 10.1016/j.stemcr.2013.11.003. eCollection 2014 Jan 14. Stem Cell Reports. 2013. PMID: 24511466 Free PMC article.

8

Improved regulatory element prediction based on tissue-specific local epigenomic signatures.

He Y, Gorkin DU, Dickel DE, Nery JR, Castanon RG, Lee AY, Shen Y, Visel A, Pennacchio LA, Ren B, Ecker JR. He Y, et al. Among authors: shen y. Proc Natl Acad Sci U S A. 2017 Feb 28;114(9):E1633-E1640. doi: 10.1073/pnas.1618353114. Epub 2017 Feb 13. Proc Natl Acad Sci U S A. 2017. PMID: 28193886 Free PMC article.

9

Transcriptional network orchestrating regional patterning of cortical progenitors.

Ypsilanti AR, Pattabiraman K, Catta-Preta R, Golonzhka O, Lindtner S, Tang K, Jones IR, Abnousi A, Juric I, Hu M, Shen Y, Dickel DE, Visel A, Pennachio LA, Hawrylycz M, Thompson CL, Zeng H, Barozzi I, Nord AS, Rubenstein JL. Ypsilanti AR, et al. Among authors: shen y. Proc Natl Acad Sci U S A. 2021 Dec 21;118(51):e2024795118. doi: 10.1073/pnas.2024795118. Proc Natl Acad Sci U S A. 2021. PMID: 34921112 Free PMC article.

10

Phase separation of YAP-MAML2 differentially regulates the transcriptome.

Chung CI, Yang J, Yang X, Liu H, Ma Z, Szulzewsky F, Holland EC, Shen Y, Shu X. Chung CI, et al. Among authors: shen y. Proc Natl Acad Sci U S A. 2024 Feb 13;121(7):e2310430121. doi: 10.1073/pnas.2310430121. Epub 2024 Feb 5. Proc Natl Acad Sci U S A. 2024. PMID: 38315854 Free PMC article.

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