Shendure J - Search Results

1

Author Correction: lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements.

Gordon MG, Inoue F, Martin B, Schubach M, Agarwal V, Whalen S, Feng S, Zhao J, Ashuach T, Ziffra R, Kreimer A, Georgakopoulos-Soares I, Yosef N, Ye CJ, Pollard KS, Shendure J, Kircher M, Ahituv N. Gordon MG, et al. Among authors: shendure j. Nat Protoc. 2021 Jul;16(7):3736. doi: 10.1038/s41596-020-00422-z. Nat Protoc. 2021. PMID: 33128032 No abstract available.

2

Massively parallel functional dissection of mammalian enhancers in vivo.

Patwardhan RP, Hiatt JB, Witten DM, Kim MJ, Smith RP, May D, Lee C, Andrie JM, Lee SI, Cooper GM, Ahituv N, Pennacchio LA, Shendure J. Patwardhan RP, et al. Among authors: shendure j. Nat Biotechnol. 2012 Feb 26;30(3):265-70. doi: 10.1038/nbt.2136. Nat Biotechnol. 2012. PMID: 22371081 Free PMC article.

3

Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model.

Smith RP, Taher L, Patwardhan RP, Kim MJ, Inoue F, Shendure J, Ovcharenko I, Ahituv N. Smith RP, et al. Among authors: shendure j. Nat Genet. 2013 Sep;45(9):1021-1028. doi: 10.1038/ng.2713. Epub 2013 Jul 28. Nat Genet. 2013. PMID: 23892608 Free PMC article.

4

The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line.

Adey A, Burton JN, Kitzman JO, Hiatt JB, Lewis AP, Martin BK, Qiu R, Lee C, Shendure J. Adey A, et al. Among authors: shendure j. Nature. 2013 Aug 8;500(7461):207-11. doi: 10.1038/nature12064. Nature. 2013. PMID: 23925245 Free PMC article.

5

A general framework for estimating the relative pathogenicity of human genetic variants.

Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J. Kircher M, et al. Among authors: shendure j. Nat Genet. 2014 Mar;46(3):310-5. doi: 10.1038/ng.2892. Epub 2014 Feb 2. Nat Genet. 2014. PMID: 24487276 Free PMC article.

6

MIPgen: optimized modeling and design of molecular inversion probes for targeted resequencing.

Boyle EA, O'Roak BJ, Martin BK, Kumar A, Shendure J. Boyle EA, et al. Among authors: shendure j. Bioinformatics. 2014 Sep 15;30(18):2670-2. doi: 10.1093/bioinformatics/btu353. Epub 2014 May 26. Bioinformatics. 2014. PMID: 24867941 Free PMC article.

7

Resolving genomic disorder-associated breakpoints within segmental DNA duplications using massively parallel sequencing.

Nuttle X, Itsara A, Shendure J, Eichler EE. Nuttle X, et al. Among authors: shendure j. Nat Protoc. 2014;9(6):1496-513. doi: 10.1038/nprot.2014.096. Epub 2014 May 29. Nat Protoc. 2014. PMID: 24874815 Free PMC article.

8

Systematic dissection of coding exons at single nucleotide resolution supports an additional role in cell-specific transcriptional regulation.

Birnbaum RY, Patwardhan RP, Kim MJ, Findlay GM, Martin B, Zhao J, Bell RJ, Smith RP, Ku AA, Shendure J, Ahituv N. Birnbaum RY, et al. Among authors: shendure j. PLoS Genet. 2014 Oct 23;10(10):e1004592. doi: 10.1371/journal.pgen.1004592. eCollection 2014 Oct. PLoS Genet. 2014. PMID: 25340400 Free PMC article.

9

Recurrent de novo mutations implicate novel genes underlying simplex autism risk.

O'Roak BJ, Stessman HA, Boyle EA, Witherspoon KT, Martin B, Lee C, Vives L, Baker C, Hiatt JB, Nickerson DA, Bernier R, Shendure J, Eichler EE. O'Roak BJ, et al. Among authors: shendure j. Nat Commun. 2014 Nov 24;5:5595. doi: 10.1038/ncomms6595. Nat Commun. 2014. PMID: 25418537 Free PMC article.

10

Running spell-check to identify regulatory variants.

Kircher M, Shendure J. Kircher M, et al. Among authors: shendure j. Nat Genet. 2015 Aug;47(8):853-5. doi: 10.1038/ng.3364. Nat Genet. 2015. PMID: 26220134

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