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FLOG: a system to select 'quasi-flexible' ligands complementary to a receptor of known three-dimensional structure.
Miller MD, Kearsley SK, Underwood DJ, Sheridan RP. Miller MD, et al. Among authors: sheridan rp. J Comput Aided Mol Des. 1994 Apr;8(2):153-74. doi: 10.1007/BF00119865. J Comput Aided Mol Des. 1994. PMID: 8064332
A systematic search for protein signature sequences.
Sheridan RP, Venkataraghavan R. Sheridan RP, et al. Proteins. 1992 Sep;14(1):16-28. doi: 10.1002/prot.340140105. Proteins. 1992. PMID: 1409561
Using shape complementarity as an initial screen in designing ligands for a receptor binding site of known three-dimensional structure.
DesJarlais RL, Sheridan RP, Seibel GL, Dixon JS, Kuntz ID, Venkataraghavan R. DesJarlais RL, et al. Among authors: sheridan rp. J Med Chem. 1988 Apr;31(4):722-9. doi: 10.1021/jm00399a006. J Med Chem. 1988. PMID: 3127588
Designing novel nicotinic agonists by searching a database of molecular shapes.
Sheridan RP, Venkataraghavan R. Sheridan RP, et al. J Comput Aided Mol Des. 1987 Oct;1(3):243-56. doi: 10.1007/BF01677047. J Comput Aided Mol Des. 1987. PMID: 3504966
Docking flexible ligands to macromolecular receptors by molecular shape.
DesJarlais RL, Sheridan RP, Dixon JS, Kuntz ID, Venkataraghavan R. DesJarlais RL, et al. Among authors: sheridan rp. J Med Chem. 1986 Nov;29(11):2149-53. doi: 10.1021/jm00161a004. J Med Chem. 1986. PMID: 3783576
Advances in automated docking applied to human immunodeficiency virus type 1 protease.
Miller MD, Sheridan RP, Kearsley SK, Underwood DJ. Miller MD, et al. Among authors: sheridan rp. Methods Enzymol. 1994;241:354-70. doi: 10.1016/0076-6879(94)41073-9. Methods Enzymol. 1994. PMID: 7854188 No abstract available.
Flexibases: a way to enhance the use of molecular docking methods.
Kearsley SK, Underwood DJ, Sheridan RP, Miller MD. Kearsley SK, et al. Among authors: sheridan rp. J Comput Aided Mol Des. 1994 Oct;8(5):565-82. doi: 10.1007/BF00123666. J Comput Aided Mol Des. 1994. PMID: 7876901
Extending the trend vector: the trend matrix and sample-based partial least squares.
Sheridan RP, Nachbar RB, Bush BL. Sheridan RP, et al. J Comput Aided Mol Des. 1994 Jun;8(3):323-40. doi: 10.1007/BF00126749. J Comput Aided Mol Des. 1994. PMID: 7964931
SQ: a program for rapidly producing pharmacophorically relevent molecular superpositions.
Miller MD, Sheridan RP, Kearsley SK. Miller MD, et al. Among authors: sheridan rp. J Med Chem. 1999 May 6;42(9):1505-14. doi: 10.1021/jm9806143. J Med Chem. 1999. PMID: 10229621
The centroid approximation for mixtures: calculating similarity and deriving structure--activity relationships.
Sheridan RP. Sheridan RP. J Chem Inf Comput Sci. 2000 Nov-Dec;40(6):1456-69. doi: 10.1021/ci000045j. J Chem Inf Comput Sci. 2000. PMID: 11128105
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